halophFGD

Basic Information

Locus ID: Ag7G02200

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Mitogen-activated protein kinase kinase kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	261102514	261108181	+	Ag7G02200

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.24	69,376.09 Da	50.54	65.74	-0.64

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd06632	STKc_MEKK1_plant	212	469	6.50431E-177	-
Pfam	PF00069	Protein kinase domain	214	469	1.4E-72	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	210	470	2.02E-89	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	210	506	1.9E-87	-
SMART	SM00220	serkin_6	213	469	1.9E-96	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	213	469	50.943897	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	219	242	-	IPR017441
PRINTS	PR00109	Tyrosine kinase catalytic domain signature	292	305	1.0E-8	IPR001245
PRINTS	PR00109	Tyrosine kinase catalytic domain signature	438	460	1.0E-8	IPR001245
PRINTS	PR00109	Tyrosine kinase catalytic domain signature	328	346	1.0E-8	IPR001245
PRINTS	PR00109	Tyrosine kinase catalytic domain signature	394	416	1.0E-8	IPR001245
MobiDBLite	mobidb-lite	consensus disorder prediction	610	629	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	59	77	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	49	93	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	27	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	136	169	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	182	206	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	144	161	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04420 (mitogen-activated protein kinase kinase kinase 2 [EC:2.7.11.25])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G53570.4	mitogen-activated protein kinase kinase kinase 3. MEK kinase (MAP3Ka)
RefSeq	XP_017228865.1	PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	F4HRJ4	Mitogen-activated protein kinase kinase kinase 3 OS=Arabidopsis thaliana OX=3702 GN=MAPKKK3 PE=1 SV=1
TrEMBL	A0A162B153	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001213 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	24.443071	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	19.416407	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	22.784409	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	24.5446	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	24.126209	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	26.49786	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	29.051441	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	21.302603	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	54.734699	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	49.589939	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	50.296883	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	39.455662	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	40.59248	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	32.013943	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	45.252003	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	46.753426	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	35.087978	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	44.395824	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	42.198307	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	56.765018	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	49.383553	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	40.787308	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	39.190117	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	38.362289	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	38.145931	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	42.644176	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	36.371475	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	34.99424	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	37.738472	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	11.953864		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	11.660341		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	9.85237		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	34.658558		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	25.287016		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	46.393215		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	27.604113		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	18.363853		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	20.481594		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	34.161457	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	38.99762	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	26.342606	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	44.804092	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	58.201756	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	46.625702	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	49.431973	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	42.915108	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	52.895561	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	36.673584	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	30.671066	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	32.615185	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg17136, jg39666
Aizoaceae	Mesembryanthemum crystallinum	1	gene_17938
Amaranthaceae	Atriplex hortensis	1	Ah027077
Amaranthaceae	Beta vulgaris	1	BVRB_6g132530
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg13463, Sbi_jg52406
Amaranthaceae	Salicornia europaea	1	Seu_jg9443
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00023143
Amaranthaceae	Suaeda glauca	2	Sgl33778, Sgl39092
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000000656, gene:ENSEOMG00000001278 ... gene:ENSEOMG00000025179, gene:ENSEOMG00000028261
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.6AG0021960, CQ.Regalona.r1.6BG0023150
Anacardiaceae	Pistacia vera	1	pistato.v30110990
Apiaceae	Apium graveolens	2	Ag3G01174, Ag7G02200
Arecaceae	Cocos nucifera	3	COCNU_02G011720, COCNU_15G003370, contig69639897G000010
Arecaceae	Phoenix dactylifera	2	gene-LOC103711039, gene-LOC103720517
Asparagaceae	Asparagus officinalis	1	AsparagusV1_02.633.V1.1
Asteraceae	Flaveria trinervia	2	Ftri17G22230, Ftri6G17484
Brassicaceae	Arabidopsis thaliana	1	AT1G53570.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10022608m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp3g27060.v2.2
Brassicaceae	Brassica nigra	2	BniB02g011410.2N, BniB07g012080.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq06G1729
Casuarinaceae	Casuarina glauca	1	Cgl06G1789
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno07g02540, gene.Cymno08g06960
Dunaliellaceae	Dunaliella salina	1	Dusal.0059s00019.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g12760
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-10206, nbisL1-mrna-10694, nbisL1-mrna-5271
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG02.870
Plantaginaceae	Plantago ovata	2	Pov_00014231, Pov_00020450
Plumbaginaceae	Limonium bicolor	3	Lb1G06374, Lb1G06387, Lb5G27777
Poaceae	Echinochloa crus-galli	9	AH07.2197, AH09.1051, BH04.979, BH07.2181, BH09.1130 ... CH04.1130, CH07.2072, CH09.1269, Contig398.18
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_2AG0133980, gene-QOZ80_2BG0189490 ... gene-QOZ80_2BG0189500, gene-QOZ80_4AG0316930, gene-QOZ80_4BG0348180, gene-QOZ80_9AG0677930, gene-QOZ80_9BG0701640
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0169650.1, HORVU.MOREX.r3.4HG0346120.2
Poaceae	Lolium multiflorum	2	gene-QYE76_008382, gene-QYE76_044105
Poaceae	Oryza coarctata	6	Oco03G012510, Oco04G013820, Oco07G006360, Oco08G006320 ... Oco21G002980, Oco22G003790
Poaceae	Oryza sativa	3	LOC_Os02g35010.1, LOC_Os04g35700.1, LOC_Os11g10100.1
Poaceae	Paspalum vaginatum	4	gene-BS78_04G161600, gene-BS78_05G145500, gene-BS78_K191800 ... gene-BS78_06G102200
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0103952, Pt_Chr0302613, Pt_Chr0302649
Poaceae	Sporobolus alterniflorus	7	Chr07G018490, Chr15G011360, Chr16G011540, Chr17G010790 ... Chr23G012650, Chr26G006870, Chr31G003670
Poaceae	Thinopyrum elongatum	2	Tel2E01G540300, Tel4E01G166400
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG044550, gene_TRIDC2BG047240 ... gene_TRIDC4AG033650, gene_TRIDC4BG016170
Poaceae	Triticum aestivum	6	TraesCS2A02G307100.1, TraesCS2B02G323700.2 ... TraesCS2D02G305500.1, TraesCS4A02G211600.1, TraesCS4B02G104900.1, TraesCS4D02G101800.3
Poaceae	Zea mays	4	Zm00001eb071350_P002, Zm00001eb168730_P005 ... Zm00001eb243650_P002, Zm00001eb422820_P001
Poaceae	Zoysia japonica	4	nbis-gene-20739, nbis-gene-23341, nbis-gene-23347 ... nbis-gene-53781
Poaceae	Zoysia macrostachya	4	Zma_g17792, Zma_g17793, Zma_g18671, Zma_g21311
Portulacaceae	Portulaca oleracea	2	evm.TU.LG03.2414, evm.TU.LG17.1459
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g11800, gene.Posoc05g18320
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_3_RagTag.900, evm.TU.Scaffold_6_RagTag.1510
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-1109
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-11150, nbisL1-mrna-9269
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-22540, nbisL1-mrna-6562
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000011l.920, evm.TU.utg000019l.658
Rhizophoraceae	Kandelia obovata	2	Maker00007259, Maker00012847
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-15774, nbisL1-mrna-5122
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-19719, nbisL1-mrna-23687
Salicaceae	Populus euphratica	2	populus_peu13646, populus_peu22808
Solanaceae	Lycium barbarum	2	gene-LOC132614984, gene-LOC132627225
Solanaceae	Solanum chilense	2	SOLCI001442400, SOLCI004101600
Solanaceae	Solanum pennellii	2	gene-LOC107004855, gene-LOC107018254
Tamaricaceae	Reaumuria soongarica	2	STRG.19610_chr07_+, gene_3399
Tamaricaceae	Tamarix chinensis	2	TC04G0357, TC11G0297
Zosteraceae	Zostera marina	2	Zosma04g14690.v3.1, Zosma05g10810.v3.1