halophFGD

Basic Information

Locus ID: Ag7G02178

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	258307512	258313053	-	Ag7G02178

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.77	70,098.04 Da	40.08	95.11	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08263	Leucine rich repeat N-terminal domain	63	100	4.8E-7	IPR013210
Pfam	PF00560	Leucine Rich Repeat	176	192	0.1	IPR001611
Pfam	PF00069	Protein kinase domain	301	570	4.7E-44	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	280	573	4.51E-75	IPR011009
SUPERFAMILY	SSF52058	L domain-like	64	197	1.51E-27	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	269	376	1.1E-31	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	377	593	7.5E-62	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	60	233	3.1E-39	IPR032675
SMART	SM00220	serkin_6	300	583	3.3E-30	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	300	578	35.495434	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	423	435	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	306	328	-	IPR017441
PRINTS	PR00019	Leucine-rich repeat signature	129	142	8.8E-5	-
PRINTS	PR00019	Leucine-rich repeat signature	174	187	8.8E-5	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G63710.1	Leucine-rich repeat protein kinase family protein.
RefSeq	XP_017228415.1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g63710 [Daucus carota subsp. sativus]
Swiss-Prot	Q8W4S5	Probable LRR receptor-like serine/threonine-protein kinase At5g63710 OS=Arabidopsis thaliana OX=3702 GN=At5g63710 PE=1 SV=1
TrEMBL	A0A175YAT4	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_031792 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	5.161776	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	5.771856	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	3.898238	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	4.647399	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	4.616168	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	3.748474	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	3.245516	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.709926	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	2.985151	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	3.793766	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	2.27711	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	5.620747	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	7.298722	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	6.147071	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.428979	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	3.534737	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	19.880518	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	8.140362	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	5.764972	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	9.601718	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	15.637324	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	68.084946	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	53.59383	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	52.740345	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	62.322151	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	21.69285	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	10.294609	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	33.415173	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	23.036446	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	3.565093		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.209627		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.082095		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	8.79469		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	6.73034		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	6.207657		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	3.525891		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.473669		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.58193		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.146943	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	8.917697	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	5.767903	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	1.199051	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	2.201494	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	63.837612	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	69.195381	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1.21234	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	29.623461	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	5.406656	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	9.877811	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	9.943327	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg17036, jg30907, jg31113, jg39516
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10288, gene_16474
Amaranthaceae	Atriplex hortensis	2	Ah005424, Ah027343
Amaranthaceae	Beta vulgaris	2	BVRB_4g078930, BVRB_6g134990
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg12725, Sbi_jg53174, Sbi_jg62334
Amaranthaceae	Salicornia europaea	2	Seu_jg8712, Seu_jg904
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00007323, GOSA_00010299
Amaranthaceae	Suaeda glauca	4	Sgl24027, Sgl29209, Sgl33829, Sgl39193
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000001653, gene:ENSEOMG00000002870 ... gene:ENSEOMG00000008239, gene:ENSEOMG00000026625, gene:ENSEOMG00000027424, gene:ENSEOMG00000041573
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.2AG0003030, CQ.Regalona.r1.4AG0005440 ... CQ.Regalona.r1.4BG0005410, CQ.Regalona.r1.6AG0024380, CQ.Regalona.r1.6BG0025690
Anacardiaceae	Pistacia vera	4	pistato.v30064310, pistato.v30202220, pistato.v30258830 ... pistato.v30258840
Apiaceae	Apium graveolens	2	Ag7G01451, Ag7G02178
Arecaceae	Cocos nucifera	4	COCNU_03G007270, COCNU_05G005790, COCNU_05G005800 ... COCNU_13G003120
Arecaceae	Phoenix dactylifera	3	gene-LOC103701542, gene-LOC103707936, gene-SERK3
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.244.V1.1, AsparagusV1_07.2588.V1.1
Asteraceae	Flaveria trinervia	2	Ftri13G27876, Ftri1G04640
Brassicaceae	Arabidopsis thaliana	3	AT5G10290.1, AT5G63710.1, AT5G65240.2
Brassicaceae	Eutrema salsugineum	3	Thhalv10003847m.g.v1.0, Thhalv10003898m.g.v1.0 ... Thhalv10013001m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g26810.v2.2, Sp2g28340.v2.2, Sp6g33140.v2.2
Brassicaceae	Brassica nigra	3	BniB05g026750.2N, BniB06g012010.2N, BniB06g013550.2N
Casuarinaceae	Casuarina equisetifolia	6	Ceq05G1694, Ceq05G2315, Ceq05G2320, Ceq05G2333, Ceq06G1400 ... Ceq06G1932
Casuarinaceae	Casuarina glauca	5	Cgl05G2435, Cgl05G2448, Cgl05G2483, Cgl06G1463, Cgl06G2028
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno02g02630
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate03g06000, gene.Thate05g11220
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-10216, nbisL1-mrna-10626
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.646, evm.TU.LG02.918
Plantaginaceae	Plantago ovata	2	Pov_00020976, Pov_00029082
Plumbaginaceae	Limonium bicolor	3	Lb1G07237, Lb2G12694, Lb2G13767
Poaceae	Echinochloa crus-galli	5	AH01.915, AH07.1246, BH01.1046, BH07.1336, CH07.1053
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0109510, gene-QOZ80_2BG0163040 ... gene-QOZ80_3AG0219730, gene-QOZ80_3BG0264960
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0291050.1
Poaceae	Lolium multiflorum	2	gene-QYE76_022252, gene-QYE76_062777
Poaceae	Oryza coarctata	3	Oco03G007770, Oco05G021160, Oco06G022020
Poaceae	Oryza sativa	2	LOC_Os02g18320.1, LOC_Os03g49620.3
Poaceae	Paspalum vaginatum	2	gene-BS78_01G111700, gene-BS78_04G122100
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0104798, Pt_Chr0201917
Poaceae	Sporobolus alterniflorus	6	Chr04G026580, Chr06G031330, Chr07G025580, Chr09G000500 ... Chr12G029990, Chr15G022640
Poaceae	Thinopyrum elongatum	2	Tel3E01G488700, Tel4E01G075700
Poaceae	Triticum dicoccoides	2	gene_TRIDC3AG044420, gene_TRIDC3BG050320
Poaceae	Triticum aestivum	3	TraesCS3A02G302200.1, TraesCS3B02G334400.2 ... TraesCS3D02G299800.1
Poaceae	Zea mays	2	Zm00001eb054260_P003, Zm00001eb237190_P001
Poaceae	Zoysia japonica	1	nbis-gene-50983
Poaceae	Zoysia macrostachya	2	Zma_g12587, Zma_g683
Portulacaceae	Portulaca oleracea	8	evm.TU.LG05.636, evm.TU.LG05.637, evm.TU.LG08.1220 ... evm.TU.LG18.1488, evm.TU.LG20.392, evm.TU.LG22.593, evm.TU.LG25.684, evm.TU.LG25.685
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g29570
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_3_RagTag.1076, evm.TU.Scaffold_6_RagTag.1399
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-16354, nbisL1-mrna-919
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-17697, nbisL1-mrna-8432
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-1202, nbisL1-mrna-2335
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000011l.890, evm.TU.utg000019l.600
Rhizophoraceae	Kandelia obovata	2	Maker00001784, Maker00008277
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-13410, nbisL1-mrna-6118
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-1766, nbisL1-mrna-3872
Salicaceae	Populus euphratica	5	populus_peu01477, populus_peu01498, populus_peu13758 ... populus_peu19650, populus_peu22916
Solanaceae	Lycium barbarum	4	gene-LOC132612627, gene-LOC132637631, gene-LOC132639989 ... gene-LOC132639990
Solanaceae	Solanum chilense	3	SOLCI001671300, SOLCI003744500, SOLCI004458900
Solanaceae	Solanum pennellii	3	gene-LOC107004712, gene-LOC107015150, gene-LOC107020602
Tamaricaceae	Reaumuria soongarica	3	STRG.16587_chr06_+, STRG.982_chr01_+, gene_12937
Tamaricaceae	Tamarix chinensis	3	TC01G1563, TC05G2157, TC09G0033
Zosteraceae	Zostera marina	1	Zosma06g16940.v3.1