halophFGD

Basic Information

Locus ID: Ag7G02166

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	257545393	257548960	+	Ag7G02166

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.13	108,704.59 Da	40.61	107.60	0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13855	Leucine rich repeat	393	451	3.5E-7	IPR001611
Pfam	PF13855	Leucine rich repeat	560	619	3.1E-7	IPR001611
Pfam	PF13855	Leucine rich repeat	296	353	8.4E-7	IPR001611
Pfam	PF13855	Leucine rich repeat	103	162	2.2E-7	IPR001611
Pfam	PF00069	Protein kinase domain	786	874	1.2E-13	IPR000719
Pfam	PF08263	Leucine rich repeat N-terminal domain	31	74	1.1E-9	IPR013210
Pfam	PF00560	Leucine Rich Repeat	536	558	0.017	IPR001611
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	879	974	5.7E-6	IPR001245
SUPERFAMILY	SSF52058	L domain-like	380	692	3.06E-60	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	762	984	1.83E-33	IPR011009
SUPERFAMILY	SSF52058	L domain-like	52	404	1.29E-61	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	286	387	4.9E-31	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	30	189	1.8E-41	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	190	285	1.4E-22	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	397	708	9.2E-91	IPR032675
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	862	995	4.7E-17	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	758	861	9.8E-23	-
SMART	SM00369	LRR_typ_2	101	124	160.0	IPR003591
SMART	SM00369	LRR_typ_2	294	318	180.0	IPR003591
SMART	SM00369	LRR_typ_2	342	366	230.0	IPR003591
SMART	SM00369	LRR_typ_2	149	173	7.6	IPR003591
SMART	SM00369	LRR_typ_2	654	687	220.0	IPR003591
SMART	SM00369	LRR_typ_2	534	557	39.0	IPR003591
SMART	SM00369	LRR_typ_2	582	606	23.0	IPR003591
SMART	SM00369	LRR_typ_2	462	486	320.0	IPR003591
ProSiteProfiles	PS50011	Protein kinase domain profile.	784	1000	13.403993	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	790	813	-	IPR017441
PRINTS	PR00019	Leucine-rich repeat signature	585	598	1.0E-5	-
PRINTS	PR00019	Leucine-rich repeat signature	631	644	1.0E-5	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G34110.1	Leucine-rich receptor-like protein kinase family protein.
RefSeq	XP_017243421.1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Daucus carota subsp. sativus]
Swiss-Prot	C0LGF5	LRR receptor-like serine/threonine-protein kinase RGI5 OS=Arabidopsis thaliana OX=3702 GN=RGI5 PE=1 SV=2
TrEMBL	A0A162B132	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001193 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.084815	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	2.016311	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.734345	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.896042	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.19525	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.70969	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.696293	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.780825	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.151825	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.395366	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.383697	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.750563	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.530992	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.249847	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.176992	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.287445	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.058934	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.156088	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.380746	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.375603	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.390632	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.264777	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.151951	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.071923	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.46196	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.145644	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.355027		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.020363	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.02273	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.090862	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.646997	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.494361	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.329671	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg22586, jg6063
Aizoaceae	Mesembryanthemum crystallinum	1	gene_22819
Amaranthaceae	Atriplex hortensis	3	Ah024606, Ah024607, Ah024608
Amaranthaceae	Beta vulgaris	2	BVRB_1g012310, BVRB_2g039850
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg39288, Sbi_jg54613
Amaranthaceae	Salicornia europaea	1	Seu_jg11138
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00015595
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000014975, gene:ENSEOMG00000035211 ... gene:ENSEOMG00000048860
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.1AG0015430, CQ.Regalona.r1.1BG0010500 ... CQ.Regalona.r1.1BG0010510
Anacardiaceae	Pistacia vera	1	pistato.v30283250
Apiaceae	Apium graveolens	1	Ag7G02166
Arecaceae	Cocos nucifera	3	COCNU_02G000350, COCNU_02G000360, COCNU_03G015900
Arecaceae	Phoenix dactylifera	2	gene-LOC103704885, gene-LOC103709763
Asparagaceae	Asparagus officinalis	1	AsparagusV1_01.2245.V1.1
Asteraceae	Flaveria trinervia	1	Ftri16G17080
Brassicaceae	Arabidopsis thaliana	1	AT1G34110.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10006642m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp1g29360.v2.2
Brassicaceae	Brassica nigra	1	BniB03g036150.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq03G1485
Casuarinaceae	Casuarina glauca	1	Cgl03G1622
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g19340
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-1834, nbisL1-mrna-1835
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG06.1605
Plantaginaceae	Plantago ovata	1	Pov_00023114
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_6AG0543790, gene-QOZ80_6BG0497170
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.7HG0715220.1
Poaceae	Lolium multiflorum	2	gene-QYE76_034808, gene-QYE76_034809
Poaceae	Oryza coarctata	2	Oco11G011880, Oco12G012050
Poaceae	Oryza sativa	1	LOC_Os06g38990.1
Poaceae	Paspalum vaginatum	1	gene-BS78_10G176900
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0302878, Pt_Chr0400576
Poaceae	Sporobolus alterniflorus	4	Chr02G029450, Chr05G007150, Chr10G017210, Chr11G005280
Poaceae	Thinopyrum elongatum	1	Tel7E01G608900
Poaceae	Triticum dicoccoides	2	gene_TRIDC7AG051420, gene_TRIDC7BG042490
Poaceae	Triticum aestivum	3	TraesCS7A02G368200.1, TraesCS7B02G260400.1 ... TraesCS7D02G354700.1
Poaceae	Zea mays	1	Zm00001eb386160_P001
Poaceae	Zoysia japonica	1	nbis-gene-41122
Poaceae	Zoysia macrostachya	2	Zma_g30752, Zma_g32997
Posidoniaceae	Posidonia oceanica	1	gene.Posoc09g10990
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_7_RagTag.1262, evm.TU.Scaffold_8_RagTag.433
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-18556, nbisL1-mrna-9826
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-13443, nbisL1-mrna-2278
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-13233, nbisL1-mrna-18023
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000002l.131, add.evm.TU.utg000018l.277
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-18026
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-11196
Salicaceae	Populus euphratica	2	populus_peu14929, populus_peu32604
Solanaceae	Lycium barbarum	2	gene-LOC132601794, gene-LOC132627391
Solanaceae	Solanum chilense	2	SOLCI005251400, SOLCI006465400
Solanaceae	Solanum pennellii	2	gene-LOC107006634, gene-LOC107016180
Tamaricaceae	Reaumuria soongarica	1	gene_15154
Tamaricaceae	Tamarix chinensis	1	TC09G1717