halophFGD

Basic Information

Locus ID: Ag7G02146

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: SET domain protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	257005049	257017440	+	Ag7G02146

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.58	55,498.43 Da	45.47	66.65	-0.58

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd10531	SET_SETD2-like	93	228	1.12341E-67	-
Pfam	PF00856	SET domain	103	209	6.5E-22	IPR001214
Pfam	PF17907	AWS domain	53	89	3.3E-13	IPR006560
SUPERFAMILY	SSF82199	SET domain	17	227	4.45E-66	-
Gene3D	G3DSA:2.170.270.10	SET domain	11	246	2.4E-74	-
SMART	SM00317	set_7	92	215	1.1E-39	IPR001214
SMART	SM00570	shorttest3	39	91	5.1E-19	IPR006560
ProSiteProfiles	PS50280	SET domain profile.	92	209	17.435692	IPR001214
ProSiteProfiles	PS50868	Post-SET domain profile.	216	232	8.577138	IPR003616
ProSiteProfiles	PS51215	AWS domain profile.	39	90	15.312477	IPR006560
MobiDBLite	mobidb-lite	consensus disorder prediction	335	386	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	340	368	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding) GO:0140938 (histone H3 methyltransferase activity)

Cellular Component:

GO:0005634 (nucleus)

KEGG Pathway

KO Term:

K11423 ([histone H3]-lysine36 N-trimethyltransferase [EC:2.1.1.359])

Pathway:

ko00310 (Lysine degradation) map00310 (Lysine degradation)

Reaction:

R03875 (Protein lysine + S-Adenosyl-L-methionine <=> Protein N6-methyl-L-lysine + S-Adenosyl-L-homocysteine) R03938 (S-Adenosyl-L-methionine + Histone-L-lysine <=> S-Adenosyl-L-homocysteine + Histone N6-methyl-L-lysine) R04866 (S-Adenosyl-L-methionine + Protein N6-methyl-L-lysine <=> S-Adenosyl-L-homocysteine + Protein N6,N6-dimethyl-L-lysine) R04867 (S-Adenosyl-L-methionine + Protein N6,N6-dimethyl-L-lysine <=> S-Adenosyl-L-homocysteine + Protein N6,N6,N6-trimethyl-L-lysine)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G76710.1	SET domain group 26.
RefSeq	XP_017230151.1	PREDICTED: histone-lysine N-methyltransferase ASHH1 [Daucus carota subsp. sativus]
Swiss-Prot	Q84WW6	Histone-lysine N-methyltransferase ASHH1 OS=Arabidopsis thaliana OX=3702 GN=ASHH1 PE=1 SV=1
TrEMBL	A0A166G7D2	Post-SET domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001155 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	15.77942	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	10.433314	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	10.659108	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	11.677729	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	11.396689	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	12.401261	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	10.614155	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	10.653573	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	15.451103	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	15.858829	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	14.809053	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	15.580791	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	15.818994	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	11.857945	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	9.545382	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	11.194331	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	10.113609	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	8.218472	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	8.549939	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	9.48072	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	9.576735	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	10.874737	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	12.715058	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	13.201644	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	11.624479	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	8.955133	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	9.09041	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	8.226088	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	11.296744	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	6.210688		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	7.160113		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	4.430203		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	6.001668		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	10.354898		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	6.372077		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	5.18956		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.911931		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	3.773615		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	9.910746	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	7.039855	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	7.160275	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	9.480532	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	8.450915	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	13.353113	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	12.107928	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	8.155239	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	12.620353	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	22.293663	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	21.687187	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	21.713423	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg5928
Aizoaceae	Mesembryanthemum crystallinum	1	gene_944
Amaranthaceae	Atriplex hortensis	1	Ah024536
Amaranthaceae	Beta vulgaris	1	BVRB_1g012020
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg39151, Sbi_jg54473
Amaranthaceae	Salicornia europaea	1	Seu_jg11006
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00022621, GOSA_00022622
Amaranthaceae	Suaeda glauca	8	Sgl14534, Sgl14962, Sgl14964, Sgl14965, Sgl19715, Sgl20102 ... Sgl20104, Sgl20105
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000013356, gene:ENSEOMG00000035716 ... gene:ENSEOMG00000049837
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.1AG0015000, CQ.Regalona.r1.1BG0010940
Anacardiaceae	Pistacia vera	1	pistato.v30283000
Apiaceae	Apium graveolens	1	Ag7G02146
Arecaceae	Cocos nucifera	1	COCNU_15G001920
Arecaceae	Phoenix dactylifera	1	gene-LOC103701241
Asparagaceae	Asparagus officinalis	1	AsparagusV1_02.745.V1.1
Asteraceae	Flaveria trinervia	1	Ftri4G24592
Brassicaceae	Arabidopsis thaliana	1	AT1G76710.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10018466m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g31860.v2.2
Brassicaceae	Brassica nigra	1	BniB03g055800.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq03G1468
Casuarinaceae	Casuarina glauca	1	Cgl03G1606
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno05g00460
Dunaliellaceae	Dunaliella salina	2	Dusal.0166s00006.v1.0, Dusal.1340s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate09g01670
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG06.1650
Plantaginaceae	Plantago ovata	1	Pov_00019483
Poaceae	Echinochloa crus-galli	2	AH09.1001, CH09.1210
Poaceae	Eleusine coracana subsp. coracana	1	gene-QOZ80_4AG0317660
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.2HG0168260.2
Poaceae	Lolium multiflorum	1	gene-QYE76_044023
Poaceae	Oryza coarctata	2	Oco07G005830, Oco08G005840
Poaceae	Oryza sativa	1	LOC_Os04g34976.2
Poaceae	Paspalum vaginatum	1	gene-BS78_06G094600
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0302693, Pt_Chr0302706
Poaceae	Sporobolus alterniflorus	1	Chr30G010930
Poaceae	Thinopyrum elongatum	1	Tel2E01G533300
Poaceae	Triticum dicoccoides	2	gene_TRIDC2AG043840, gene_TRIDC2BG046490
Poaceae	Triticum aestivum	3	TraesCS2A02G302100.1, TraesCS2B02G317900.1 ... TraesCS2D02G300800.1
Poaceae	Zea mays	1	Zm00001eb082920_P002
Poaceae	Zoysia japonica	1	nbis-gene-37865
Poaceae	Zoysia macrostachya	1	Zma_g19696
Portulacaceae	Portulaca oleracea	2	evm.TU.LG04.1303, evm.TU.LG05.1839
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g01450
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_8_RagTag.507, evm.TU.Scaffold_8_RagTag.508 ... evm.TU.Scaffold_8_RagTag.509
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-9756
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-2221
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-18088
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000018l.671
Rhizophoraceae	Kandelia obovata	1	Maker00003809
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-9616
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-18664
Salicaceae	Populus euphratica	1	populus_peu14907
Solanaceae	Lycium barbarum	1	gene-LOC132603218
Solanaceae	Solanum chilense	5	SOLCI002911100, SOLCI003178000, SOLCI004321000 ... SOLCI005256100, SOLCI005785700
Solanaceae	Solanum pennellii	3	gene-LOC107024743, gene-LOC107026453, gene-LOC107030284
Tamaricaceae	Reaumuria soongarica	1	gene_8643
Tamaricaceae	Tamarix chinensis	1	TC03G2916
Zosteraceae	Zostera marina	1	Zosma01g42200.v3.1