Basic Information
Locus ID:
Ag7G02120
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
DUF4205
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 255651315 | 255673988 | - | Ag7G02120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 66,484.04 Da | 43.46 | 86.96 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13898 | Domain of unknown function (DUF4205) | 111 | 420 | 6.5E-58 | IPR025257 |
| SUPERFAMILY | SSF47473 | EF-hand | 422 | 483 | 1.55E-5 | IPR011992 |
| SMART | SM00726 | uim | 3 | 22 | 0.0027 | IPR003903 |
| SMART | SM01174 | DUF4205_3 | 109 | 476 | 7.3E-141 | IPR025257 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 4 | 22 | 10.138411 | IPR003903 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 48 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G43690.1 | ubiquitin interaction motif-containing protein. | 0 |
| RefSeq | XP_017229442.1 | PREDICTED: protein FAM188A [Daucus carota subsp. sativus] | 0 |
| A0AUR5 | Ubiquitin carboxyl-terminal hydrolase MINDY-3 OS=Danio rerio OX=7955 GN=mindy3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166G6M2 | ubiquitinyl hydrolase 1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001131 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 14.894297 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 13.085642 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 18.980776 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 17.907478 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 18.910173 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 15.321393 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 18.768566 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 16.202183 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 34.937851 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 34.574295 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 34.647591 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 36.659309 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 33.773029 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 31.51227 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 16.560343 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 17.631062 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 20.812185 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 18.792076 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 16.889132 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 20.576117 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 19.071934 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 23.503681 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 26.33045 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 28.388666 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 21.206125 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 22.214207 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 20.156963 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 17.82971 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 22.926033 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.878688 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.803681 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.453983 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 13.813156 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 13.128774 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 12.170039 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 8.069993 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.077476 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.317832 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.911884 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 11.218679 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.291684 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 27.268267 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 15.750914 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 18.066484 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 17.482944 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 29.105877 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 19.033096 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 24.197611 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 22.008362 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 26.607582 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23084, jg6398 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_980 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah024407, Ah034321 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g011440 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39017, Sbi_jg54304 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10889 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023701 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl04450, Sgl15267, Sgl15339, Sgl20409 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015398, gene:ENSEOMG00000033626 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0014480, CQ.Regalona.r1.1BG0011570 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30037950 |
| Apiaceae | Apium graveolens | 1 | Ag7G02120 |
| Arecaceae | Cocos nucifera | 2 | COCNU_15G001570, scaffold031157G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701205, gene-LOC103703168 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.156.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G16653 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G43690.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011324m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g32700.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g065220.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1966 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2114 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g08070 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0461s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g20320 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1829 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.198 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015627 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G31489, Lb7G34394 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.971, BH09.1047, CH09.1183 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0317920, gene-QOZ80_4BG0349310 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0167660.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_043882 |
| Poaceae | Oryza coarctata | 2 | Oco07G005690, Oco08G005620 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g34440.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G091700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0302764 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G013240, Chr25G011460, Chr26G006350, Chr30G011040 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G530300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG043430, gene_TRIDC2BG046260 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G299800.2, TraesCS2B02G316300.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb422260_P001, Zm00001eb422280_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-37887 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19682 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1129, evm.TU.LG14.471 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g20920 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.538 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18609, nbisL1-mrna-9722 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10369 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18114 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.652 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003481 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9637 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18638 |
| Salicaceae | Populus euphratica | 4 | populus_peu14873, populus_peu14874, populus_peu32547 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627319 |
| Solanaceae | Solanum chilense | 1 | SOLCI006060400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018006 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15715 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2861, TC09G1918 |
| Zosteraceae | Zostera marina | 1 | Zosma04g23860.v3.1 |