Basic Information
Locus ID:
Ag7G02100
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
cofactor B
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 254155302 | 254161731 | - | Ag7G02100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 27,284.46 Da | 37.80 | 67.47 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01789 | Ubl_TBCB | 12 | 91 | 4.41319E-30 | - |
| Pfam | PF01302 | CAP-Gly domain | 159 | 225 | 8.9E-23 | IPR000938 |
| Pfam | PF14560 | Ubiquitin-like domain | 12 | 96 | 3.2E-26 | IPR000626 |
| SUPERFAMILY | SSF74924 | Cap-Gly domain | 101 | 229 | 1.24E-34 | IPR036859 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 7 | 99 | 5.05E-19 | IPR029071 |
| Gene3D | G3DSA:2.30.30.190 | - | 153 | 234 | 2.3E-28 | IPR036859 |
| Gene3D | G3DSA:3.10.20.90 | - | 11 | 95 | 8.5E-30 | - |
| SMART | SM01052 | CAP_GLY_2 | 159 | 226 | 2.0E-28 | IPR000938 |
| ProSiteProfiles | PS50245 | CAP-Gly domain profile. | 179 | 221 | 16.562132 | IPR000938 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10220.1 | tubulin folding cofactor B. Encodes a tubulin-binding cofactor. Homozygous mutant plants are embryo lethal. Heterozygous mutant plants showed increased ploidy and higher numbers of spindles and phragmoplasts, suggesting a role in cell division. | 0 |
| RefSeq | XP_017230405.1 | PREDICTED: tubulin-folding cofactor B [Daucus carota subsp. sativus] | 0 |
| Q67Z52 | Tubulin-folding cofactor B OS=Arabidopsis thaliana OX=3702 GN=TFCB PE=1 SV=1 | 0 | |
| TrEMBL | A0A166G5S6 | CAP-Gly domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001099 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.58872 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.074782 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.994361 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.770952 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 10.473242 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.723962 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.628878 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.102129 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 23.86635 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 23.068867 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 19.450344 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 21.19236 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 21.469374 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 19.081915 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 28.092974 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 32.715916 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 28.410051 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 20.387236 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 21.68223 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 18.76232 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 16.950235 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 25.045158 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 24.849716 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 25.507366 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 26.265234 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 24.108629 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 25.883074 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 19.369858 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 25.528109 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.640138 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.024261 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.812359 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 10.40926 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 13.040116 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.53542 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.142001 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.775847 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.290902 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 13.47606 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.463486 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.325514 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.134626 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 8.335962 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 13.599529 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 11.608311 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 7.338695 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 17.833784 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 25.130196 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 25.697933 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 21.896547 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1117 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_14088, gene_14089, gene_9374 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12289, Sbi_jg24594 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28720 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00014735, GOSA_00014736 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41795, Sgl46595 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000011577, gene:ENSEOMG00000016645 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.8AG0014610, CQ.Regalona.r1.8BG0015900 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30087880 |
| Apiaceae | Apium graveolens | 1 | Ag7G02100 |
| Arecaceae | Cocos nucifera | 1 | scaffold003237G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713905 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2876.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G03165 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G10220.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021412m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g08500.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g054760.2N, BniB07g057870.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0939 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1052, Cgl04G1065 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g01850 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0118s00014.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g13280 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2598 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007665 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G07487 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2820, BH09.3052, CH09.3226 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0298230, gene-QOZ80_4BG0328890 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0217510.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032479 |
| Poaceae | Oryza coarctata | 2 | Oco07G020120, Oco08G019490 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g59560.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G297600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0402874, Pt_Chr0405585 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr30G000250 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G1040900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG081770, gene_TRIDC2BG090870 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G559500.1, TraesCS2B02G620700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb076570_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6279 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22302 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1692, evm.TU.LG10.1181 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g19160 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1645 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17561 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13572 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.81 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012043 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13231 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12337 |
| Salicaceae | Populus euphratica | 1 | populus_peu10860 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632362 |
| Solanaceae | Solanum chilense | 1 | SOLCI001832700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014162 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.5078_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0445 |
| Zosteraceae | Zostera marina | 1 | Zosma04g23500.v3.1 |