halophFGD

Basic Information

Locus ID: Ag7G02095

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: L-type lectin-domain containing receptor kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	254026154	254028262	+	Ag7G02095

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.78	44,030.16 Da	42.69	77.53	-0.10

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd06899	lectin_legume_LecRK_Arcelin_ConA	29	261	1.71321E-65	IPR001220
Pfam	PF00139	Legume lectin domain	29	261	1.5E-49	IPR001220
SUPERFAMILY	SSF49899	Concanavalin A-like lectins/glucanases	29	263	9.79E-54	IPR013320
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	311	372	7.15E-5	IPR011009
Gene3D	G3DSA:2.60.120.200	-	19	261	3.2E-57	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	291	381	1.4E-10	-
ProSitePatterns	PS00307	Legume lectins beta-chain signature.	143	149	-	IPR019825
MobiDBLite	mobidb-lite	consensus disorder prediction	373	401	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	386	401	-	-

Gene Ontology

Molecular Function:

GO:0030246 (carbohydrate binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G42120.1	Concanavalin A-like lectin protein kinase family protein.
RefSeq	XP_017229900.1	PREDICTED: L-type lectin-domain containing receptor kinase S.6-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9FHX3	L-type lectin-domain containing receptor kinase S.6 OS=Arabidopsis thaliana OX=3702 GN=LECRKS6 PE=2 SV=1
TrEMBL	A0A166G5L1	Lectin_legB domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001092 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.129235	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.114587	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.248249	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	5.037482	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	1.699703	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.722641	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.009356	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.688263		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.040225	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.157612	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg14937, jg24610, jg32053, jg3451, jg38434, jg6392
Aizoaceae	Mesembryanthemum crystallinum	2	gene_5994, gene_7136
Amaranthaceae	Atriplex hortensis	3	Ah009067, Ah024303, Ah030271
Amaranthaceae	Beta vulgaris	2	BVRB_1g011030, BVRB_4g090510
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg18526, Sbi_jg2078, Sbi_jg34438, Sbi_jg36924 ... Sbi_jg38658
Amaranthaceae	Salicornia europaea	4	Seu_jg10512, Seu_jg10513, Seu_jg2693, Seu_jg4801
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00005803, GOSA_00017324, GOSA_00021061
Amaranthaceae	Suaeda glauca	7	Sgl10215, Sgl15417, Sgl15450, Sgl23568, Sgl28768, Sgl71194 ... Sgl74765
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000007652, gene:ENSEOMG00000016130 ... gene:ENSEOMG00000027972, gene:ENSEOMG00000036529, gene:ENSEOMG00000039807, gene:ENSEOMG00000042613, gene:ENSEOMG00000046867
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.1AG0014080, CQ.Regalona.r1.1BG0012070 ... CQ.Regalona.r1.2BG0001050, CQ.Regalona.r1.4BG0026050, CQ.Regalona.r1.7AG0017560
Anacardiaceae	Pistacia vera	3	pistato.v30038080, pistato.v30152960, pistato.v30154820
Apiaceae	Apium graveolens	9	Ag11G03722, Ag2G01686, Ag3G01103, Ag3G02684, Ag4G01603 ... Ag4G02453, Ag7G02095, AgUnG01278, AgUnG01279
Arecaceae	Cocos nucifera	5	COCNU_01G006260, COCNU_01G013740, COCNU_03G005480 ... COCNU_04G014310, COCNU_16G006800
Arecaceae	Phoenix dactylifera	5	gene-LOC103706664, gene-LOC103709868, gene-LOC103713307 ... gene-LOC103717805, gene-LOC120110470
Asparagaceae	Asparagus officinalis	1	AsparagusV1_01.555.V1.1
Asteraceae	Flaveria trinervia	6	Ftri10G17126, Ftri11G14807, Ftri13G07654, Ftri15G32468 ... Ftri16G11061, Ftri16G11132
Brassicaceae	Arabidopsis thaliana	4	AT3G53380.1, AT5G03140.1, AT5G42120.1, AT5G55830.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10005258m.g.v1.0, Thhalv10010158m.g.v1.0 ... Thhalv10012869m.g.v1.0, Thhalv10015744m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp2g16310.v2.2, Sp5g08970.v2.2, Sp6g17710.v2.2 ... Sp6g39580.v2.2
Brassicaceae	Brassica nigra	4	BniB02g034530.2N, BniB02g067350.2N, BniB06g066070.2N ... BniB08g000960.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq01G1487, Ceq03G1948, Ceq08G1298
Casuarinaceae	Casuarina glauca	3	Cgl01G1652, Cgl03G2096, Cgl08G1327
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g04200, gene.Cymno05g15670
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g32800, gene.Thate09g17180
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.1403, evm.TU.LG05.2042, evm.TU.LG06.734
Plantaginaceae	Plantago ovata	3	Pov_00004352, Pov_00005128, Pov_00036905
Plumbaginaceae	Limonium bicolor	9	Lb2G08838, Lb2G11866, Lb2G15304, Lb4G23474, Lb4G24555 ... Lb4G24558, Lb4G25001, Lb4G25004, Lb4G26363
Poaceae	Echinochloa crus-galli	1	CH05.1024
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0130030, gene-QOZ80_2BG0185220 ... gene-QOZ80_5AG0406700, gene-QOZ80_5BG0454720, gene-QOZ80_6AG0517460, gene-QOZ80_6BG0469490
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0014410.1.CDS1 ... HORVU.MOREX.r3.1HG0071260.1.CDS1, HORVU.MOREX.r3.7HG0672450.1.CDS1
Poaceae	Lolium multiflorum	2	gene-QYE76_009106, gene-QYE76_014175
Poaceae	Oryza coarctata	6	Oco03G009520, Oco04G009910, Oco09G001260, Oco10G001340 ... Oco11G007460, Oco12G007500
Poaceae	Oryza sativa	3	LOC_Os02g26160.1, LOC_Os05g03450.1, LOC_Os06g17490.1
Poaceae	Paspalum vaginatum	3	gene-BS78_04G126100, gene-BS78_09G026700 ... gene-BS78_10G120600
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0500156
Poaceae	Sporobolus alterniflorus	5	Chr06G012000, Chr11G017790, Chr15G013770, Chr18G002060 ... Chr22G016050
Poaceae	Thinopyrum elongatum	3	Tel1E01G136400, Tel1E01G485600, Tel7E01G388300
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG009150, gene_TRIDC1AG044520 ... gene_TRIDC1BG011320, gene_TRIDC1BG050380, gene_TRIDC3AG066900, gene_TRIDC7AG027080, gene_TRIDC7BG017600
Poaceae	Triticum aestivum	9	TraesCS1A02G066200.1.cds1, TraesCS1A02G299900.1.cds1 ... TraesCS1B02G084500.1.cds1, TraesCS1B02G309800.1.cds1, TraesCS1D02G067200.1.cds1, TraesCS1D02G299200.1.cds1, TraesCS7A02G214400.1.cds1, TraesCS7B02G121700.1.cds1, TraesCS7D02G216300.1.cds1
Poaceae	Zea mays	4	Zm00001eb236670_P001, Zm00001eb265290_P001 ... Zm00001eb280870_P001, Zm00001eb355080_P001
Poaceae	Zoysia japonica	4	nbis-gene-19073, nbis-gene-44271, nbis-gene-50201 ... nbis-gene-54005
Poaceae	Zoysia macrostachya	3	Zma_g16287, Zma_g26343, Zma_g29507
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.2312, evm.TU.LG08.678, evm.TU.LG19.755 ... evm.TU.LG24.746
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g36280, gene.Posoc03g08370
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.1582, evm.TU.Scaffold_7_RagTag.1207 ... evm.TU.Scaffold_8_RagTag.1645
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-18634, nbisL1-mrna-19685, nbisL1-mrna-5281 ... nbisL1-mrna-5378
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1096, nbisL1-mrna-21037, nbisL1-mrna-4013
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-13182, nbisL1-mrna-22340, nbisL1-mrna-3887
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000002l.146, add.evm.TU.utg000016l.233 ... add.evm.TU.utg000028l.12
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-18776, nbisL1-mrna-20294, nbisL1-mrna-7999
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-18412, nbisL1-mrna-22588, nbisL1-mrna-504
Salicaceae	Populus euphratica	5	populus_peu00896, populus_peu11713, populus_peu14855 ... populus_peu17812, populus_peu25772
Solanaceae	Lycium barbarum	4	gene-LOC132607100, gene-LOC132618575, gene-LOC132622380 ... gene-LOC132630080
Solanaceae	Solanum chilense	4	SOLCI000061300, SOLCI000206800, SOLCI001791500 ... SOLCI002308500
Solanaceae	Solanum pennellii	4	gene-LOC107017442, gene-LOC107024605, gene-LOC107029450 ... gene-LOC107031961
Tamaricaceae	Reaumuria soongarica	3	STRG.2839_chr01_+, gene_13079, gene_895
Tamaricaceae	Tamarix chinensis	4	TC03G2847, TC05G2605, TC07G0671, TC09G1930
Zosteraceae	Zostera marina	1	Zosma01g18520.v3.1