Basic Information
Locus ID:
Ag7G02089
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 253886005 | 253894264 | + | Ag7G02089 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.44 | 182,108.77 Da | 49.23 | 70.81 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:4.10.1000.10 | - | 1535 | 1592 | 1.5E-12 | - |
| SMART | SM00356 | c3hfinal6 | 1563 | 1588 | 0.29 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 1537 | 1561 | 23.0 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 1508 | 1536 | 0.0052 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 1563 | 1589 | 11.78858 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 1508 | 1537 | 12.868326 | IPR000571 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 989 | 1008 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 954 | 970 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1249 | 1271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 954 | 974 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1130 | 1155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1167 | 1187 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21580.7 | - | 0 |
| RefSeq | XP_017225574.1 | PREDICTED: uncharacterized protein LOC108201786 isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q3ED78 | Zinc finger CCCH domain-containing protein 7 OS=Arabidopsis thaliana OX=3702 GN=At1g21570 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166IAR9 | Zinc finger CCCH domain-containing protein 13-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003591 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 18.648788 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 13.001852 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 12.740745 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.359839 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 15.11872 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 16.356913 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 15.164263 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 18.593866 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 15.035435 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 15.119834 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 16.129854 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 17.473261 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 18.351696 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.671069 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 8.431186 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.652383 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 9.917826 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.760651 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 10.599299 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 12.252869 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 16.425783 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.042121 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 11.872245 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.938601 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 11.787473 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 18.094543 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 12.602826 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 14.287667 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 16.589266 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.955119 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.793138 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.021499 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.366696 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.111174 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.409214 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.80095 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.519538 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.692992 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 13.4076 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 13.480448 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 14.231998 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 13.932087 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 15.312677 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 21.333664 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 21.982758 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 7.222167 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 24.625103 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 11.959716 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 16.066753 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 11.947705 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12054 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1067 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah024158 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g010270 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2665, Sbi_jg28291 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7144 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020163 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl01518, Sgl01520, Sgl06687, Sgl06689 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013104, gene:ENSEOMG00000035672 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1AG0013030, CQ.Regalona.r1.1AG0013050 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30044590 |
| Apiaceae | Apium graveolens | 1 | Ag7G02089 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G010880 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722434 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.3474.V1.1, AsparagusV1_05.3232.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G10483 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G21580.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006523m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g19110.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g009250.2N, BniB04g036350.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2020 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g05540 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0173s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g26420 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1692 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.826 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023089 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30858 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2398, BH06.2193, CH06.2413 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0545910, gene-QOZ80_6BG0499320 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0746460.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_036727 |
| Poaceae | Oryza coarctata | 2 | Oco11G013500, Oco12G013640 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g43120.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G201600 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0401630, Pt_Chr0401647, Pt_Chr0401649, Pt_Chr0401650 ... |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G030600, Chr05G008360, Chr10G018620, Chr10G018630 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G915200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG073590, gene_TRIDC7BG069960 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G525900.1, TraesCS7B02G443500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb387360_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-9951 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30863 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1183, evm.TU.LG14.514 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g16560 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1150 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18698 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-7256, nbisL1-mrna-9973, nbisL1-mrna-9974 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13137 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.401 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011906 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8898 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24349 |
| Salicaceae | Populus euphratica | 4 | populus_peu14784, populus_peu14785, populus_peu14786 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627172 |
| Solanaceae | Solanum chilense | 1 | SOLCI003198300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017622 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.20227_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2529 |
| Zosteraceae | Zostera marina | 1 | Zosma03g17850.v3.1 |