halophFGD

Basic Information

Locus ID: Ag7G02079

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Ordered Locus Names sll0103

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	253495363	253497404	-	Ag7G02079

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.97	58,002.19 Da	36.05	94.75	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14624	VWA / Hh protein intein-like	408	473	6.0E-8	IPR032838
Pfam	PF00092	von Willebrand factor type A domain	65	237	3.5E-18	IPR002035
SUPERFAMILY	SSF53300	vWA-like	61	242	1.11E-24	IPR036465
Gene3D	G3DSA:3.40.50.410	von Willebrand factor, type A domain	65	244	1.0E-33	IPR036465
SMART	SM00327	VWA_4	63	237	8.1E-19	IPR002035
ProSiteProfiles	PS50234	VWFA domain profile.	65	243	16.539812	IPR002035

Best hit

Source	Best Hit ID	Description
TAIR	AT5G60710.1	Zinc finger (C3HC4-type RING finger) family protein.
RefSeq	XP_017238398.1	PREDICTED: uncharacterized protein sll0103-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9LTA6	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1
TrEMBL	A0A162B7B6	VWFA domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003579 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.362713	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.131838	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.128196	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.499296	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.111206	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.37422	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	15	gene_12183, gene_12187, gene_12188, gene_12189, gene_12190 ... gene_12191, gene_12192, gene_12196, gene_15442, gene_17548, gene_17551, gene_17554, gene_24845, gene_24846, gene_25838
Amaranthaceae	Beta vulgaris	3	BVRB_4g089380, BVRB_4g089440, BVRB_4g089470
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg18942, Sbi_jg37398
Amaranthaceae	Salicornia europaea	1	Seu_jg5237
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00017413, GOSA_00019875
Amaranthaceae	Suaeda glauca	2	Sgl71537, Sgl75115
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000007277, gene:ENSEOMG00000021246
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.5BG0017610
Apiaceae	Apium graveolens	4	Ag7G02069, Ag7G02073, Ag7G02075, Ag7G02079
Poaceae	Echinochloa crus-galli	15	AH04.789, AH05.386, AH05.3867, AH05.387, AH05.521, AH05.524 ... AH08.355, AH08.358, BH05.446, BH05.447, BH05.578, CH05.509, CH05.511, CH05.652, CH05.655
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_6AG0505720, gene-QOZ80_6BG0457760 ... gene-QOZ80_9AG0677590, gene-QOZ80_9AG0681630, gene-QOZ80_9AG0681670, gene-QOZ80_9AG0681840, gene-QOZ80_9BG0701280, gene-QOZ80_9BG0706470
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.4HG0332610.1, HORVU.MOREX.r3.5HG0420760.1 ... HORVU.MOREX.r3.5HG0420790.1, HORVU.MOREX.r3.7HG0635350.1.CDS1, HORVU.MOREX.r3.7HG0635360.1.CDS1, HORVU.MOREX.r3.7HG0728740.1
Poaceae	Lolium multiflorum	6	gene-QYE76_002231, gene-QYE76_004209, gene-QYE76_019239 ... gene-QYE76_032850, gene-QYE76_032851, gene-QYE76_065541
Poaceae	Oryza coarctata	6	Oco01G015500, Oco01G015510, Oco02G015830, Oco06G016040 ... Oco06G016050, Oco12G004370
Poaceae	Oryza sativa	2	LOC_Os01g45320.1, LOC_Os03g28990.1
Poaceae	Paspalum vaginatum	3	gene-BS78_05G190100, gene-BS78_05G197900, gene-BS78_K170600
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0404275, Pt_Chr0405768, Pt_Chr0405771, Pt_Chr0702313
Poaceae	Sporobolus alterniflorus	6	Chr0G006700, Chr16G006940, Chr16G006950, Chr17G006340 ... Chr18G002690, Chr26G000180
Poaceae	Thinopyrum elongatum	7	Tel2E01G057200, Tel2E01G058700, Tel3E01G845300 ... Tel5E01G025900, Tel6E01G021000, Tel7E01G709900, Tel7E01G748900
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG001950, gene_TRIDC4AG072190 ... gene_TRIDC6AG000790, gene_TRIDC7AG000950, gene_TRIDC7AG001150, gene_TRIDC7AG059450
Poaceae	Triticum aestivum	19	TraesCS2B02G026900.1, TraesCS3B02G577600.1 ... TraesCS3D02G516600.1, TraesCS4A02G484700.1.cds1, TraesCS5A02G011500.1, TraesCS5A02G011700.1, TraesCS5B02G009400.1, TraesCS5B02G009600.1, TraesCS5D02G016400.1, TraesCS5D02G016600.1, TraesCS6A02G006500.1, TraesCS6D02G009300.1, TraesCS7A02G010300.1.cds1, TraesCS7A02G426800.1, TraesCS7B02G327100.1, TraesCS7B02G344600.1, TraesCS7D02G010200.1.cds1, TraesCS7D02G418800.1, TraesCS7D02G434400.1
Poaceae	Zea mays	2	Zm00001eb411520_P001, Zm00001eb418460_P001
Poaceae	Zoysia japonica	4	nbis-gene-38561, nbis-gene-38567, nbis-gene-38695 ... nbis-gene-44305
Poaceae	Zoysia macrostachya	4	Zma_g17879, Zma_g18023, Zma_g18766, Zma_g18826
Portulacaceae	Portulaca oleracea	7	evm.TU.LG02.533, evm.TU.LG02.537, evm.TU.LG02.541 ... evm.TU.LG09.1774, evm.TU.LG09.1777, evm.TU.LG09.1781, evm.TU.LG09.1785
Tamaricaceae	Tamarix chinensis	5	TC04G1425, TC04G1430, TC04G1446, TC04G1452, TC04G1460