halophFGD

Basic Information

Locus ID: Ag7G02075

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: von Willebrand factor type A domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	253348346	253433894	-	Ag7G02075

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.81	116,159.94 Da	40.25	83.39	-0.38

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00092	von Willebrand factor type A domain	64	234	9.0E-19	IPR002035
SUPERFAMILY	SSF53300	vWA-like	63	236	2.97E-25	IPR036465
Gene3D	G3DSA:3.40.50.410	von Willebrand factor, type A domain	64	241	1.5E-36	IPR036465
SMART	SM00327	VWA_4	62	234	1.5E-17	IPR002035
ProSiteProfiles	PS50234	VWFA domain profile.	64	240	17.473169	IPR002035
MobiDBLite	mobidb-lite	consensus disorder prediction	852	923	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	812	838	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	721	737	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	852	891	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	563	598	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	565	580	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	702	773	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	581	598	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	738	752	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	902	918	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT1G08050.1	Zinc finger (C3HC4-type RING finger) family protein.
RefSeq	XP_017238398.1	PREDICTED: uncharacterized protein sll0103-like [Daucus carota subsp. sativus]
Swiss-Prot	Q38967	Amino acid permease 2 OS=Arabidopsis thaliana OX=3702 GN=AAP2 PE=1 SV=1
TrEMBL	A0A162B7B6	VWFA domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003579 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.03029	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.084795	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.193564	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.063443	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.380229	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.09601	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	6.440333	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	7.447036	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	7.680963	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	6.691494	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	6.230742	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	5.878343	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	2.92669	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	2.682352	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.026859	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.055243		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.020725		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.888625		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	2.254399		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	7.687289		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	7.471374		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.236167		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	3.686059		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.386719	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.060506	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.324733	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	1.680494	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.313617	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.228533	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	3.331478	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.106903	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	2.287219	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.255419	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.92297	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	15	gene_12183, gene_12187, gene_12188, gene_12189, gene_12190 ... gene_12191, gene_12192, gene_12196, gene_15442, gene_17548, gene_17551, gene_17554, gene_24845, gene_24846, gene_25838
Amaranthaceae	Beta vulgaris	3	BVRB_4g089380, BVRB_4g089440, BVRB_4g089470
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg18942, Sbi_jg37398
Amaranthaceae	Salicornia europaea	1	Seu_jg5237
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00017413, GOSA_00019875
Amaranthaceae	Suaeda glauca	2	Sgl71537, Sgl75115
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000007277, gene:ENSEOMG00000021246
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.5BG0017610
Apiaceae	Apium graveolens	4	Ag7G02069, Ag7G02073, Ag7G02075, Ag7G02079
Poaceae	Echinochloa crus-galli	15	AH04.789, AH05.386, AH05.3867, AH05.387, AH05.521, AH05.524 ... AH08.355, AH08.358, BH05.446, BH05.447, BH05.578, CH05.509, CH05.511, CH05.652, CH05.655
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_6AG0505720, gene-QOZ80_6BG0457760 ... gene-QOZ80_9AG0677590, gene-QOZ80_9AG0681630, gene-QOZ80_9AG0681670, gene-QOZ80_9AG0681840, gene-QOZ80_9BG0701280, gene-QOZ80_9BG0706470
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.4HG0332610.1, HORVU.MOREX.r3.5HG0420760.1 ... HORVU.MOREX.r3.5HG0420790.1, HORVU.MOREX.r3.7HG0635350.1.CDS1, HORVU.MOREX.r3.7HG0635360.1.CDS1, HORVU.MOREX.r3.7HG0728740.1
Poaceae	Lolium multiflorum	6	gene-QYE76_002231, gene-QYE76_004209, gene-QYE76_019239 ... gene-QYE76_032850, gene-QYE76_032851, gene-QYE76_065541
Poaceae	Oryza coarctata	6	Oco01G015500, Oco01G015510, Oco02G015830, Oco06G016040 ... Oco06G016050, Oco12G004370
Poaceae	Oryza sativa	2	LOC_Os01g45320.1, LOC_Os03g28990.1
Poaceae	Paspalum vaginatum	3	gene-BS78_05G190100, gene-BS78_05G197900, gene-BS78_K170600
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0404275, Pt_Chr0405768, Pt_Chr0405771, Pt_Chr0702313
Poaceae	Sporobolus alterniflorus	6	Chr0G006700, Chr16G006940, Chr16G006950, Chr17G006340 ... Chr18G002690, Chr26G000180
Poaceae	Thinopyrum elongatum	7	Tel2E01G057200, Tel2E01G058700, Tel3E01G845300 ... Tel5E01G025900, Tel6E01G021000, Tel7E01G709900, Tel7E01G748900
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG001950, gene_TRIDC4AG072190 ... gene_TRIDC6AG000790, gene_TRIDC7AG000950, gene_TRIDC7AG001150, gene_TRIDC7AG059450
Poaceae	Triticum aestivum	19	TraesCS2B02G026900.1, TraesCS3B02G577600.1 ... TraesCS3D02G516600.1, TraesCS4A02G484700.1.cds1, TraesCS5A02G011500.1, TraesCS5A02G011700.1, TraesCS5B02G009400.1, TraesCS5B02G009600.1, TraesCS5D02G016400.1, TraesCS5D02G016600.1, TraesCS6A02G006500.1, TraesCS6D02G009300.1, TraesCS7A02G010300.1.cds1, TraesCS7A02G426800.1, TraesCS7B02G327100.1, TraesCS7B02G344600.1, TraesCS7D02G010200.1.cds1, TraesCS7D02G418800.1, TraesCS7D02G434400.1
Poaceae	Zea mays	2	Zm00001eb411520_P001, Zm00001eb418460_P001
Poaceae	Zoysia japonica	4	nbis-gene-38561, nbis-gene-38567, nbis-gene-38695 ... nbis-gene-44305
Poaceae	Zoysia macrostachya	4	Zma_g17879, Zma_g18023, Zma_g18766, Zma_g18826
Portulacaceae	Portulaca oleracea	7	evm.TU.LG02.533, evm.TU.LG02.537, evm.TU.LG02.541 ... evm.TU.LG09.1774, evm.TU.LG09.1777, evm.TU.LG09.1781, evm.TU.LG09.1785
Tamaricaceae	Tamarix chinensis	5	TC04G1425, TC04G1430, TC04G1446, TC04G1452, TC04G1460