halophFGD

Basic Information

Locus ID: Ag7G02073

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: von Willebrand factor type A domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	253292788	253295085	+	Ag7G02073

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.48	59,429.27 Da	38.25	91.48	-0.27

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00092	von Willebrand factor type A domain	84	251	3.2E-21	IPR002035
Pfam	PF14624	VWA / Hh protein intein-like	424	491	5.3E-12	IPR032838
SUPERFAMILY	SSF53300	vWA-like	83	251	1.08E-26	IPR036465
Gene3D	G3DSA:3.40.50.410	von Willebrand factor, type A domain	84	261	7.9E-38	IPR036465
SMART	SM00327	VWA_4	82	258	7.2E-17	IPR002035
ProSiteProfiles	PS50234	VWFA domain profile.	84	260	17.649275	IPR002035
Coils	Coil	Coil	399	419	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT1G08050.1	Zinc finger (C3HC4-type RING finger) family protein.
RefSeq	XP_017238398.1	PREDICTED: uncharacterized protein sll0103-like [Daucus carota subsp. sativus]
Swiss-Prot	Q61702	Inter-alpha-trypsin inhibitor heavy chain H1 OS=Mus musculus OX=10090 GN=Itih1 PE=1 SV=2
TrEMBL	A0A162B7B6	VWFA domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003579 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	3.238847	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	2.452817	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	4.630157	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	5.39597	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	5.472025	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	3.325026	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	7.187114	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.285756	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	64.902367	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	42.822014	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	54.934731	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	50.991447	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	35.241322	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	29.427021	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	8.827496	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.838732	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.155281	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	37.082531	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.153609	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	886.040283	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	1242.127197	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.308068	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.48269	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.179509	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.343488	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.049316	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.230766	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	9.673345		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.695696		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.044515		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	154.464508		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	111.767128		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	693.110657		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	772.797119		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	31.221113		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	376.612854		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.951979	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	3.587802	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	21.035717	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	1762.262451	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	159.750717	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	144.945068	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	247.986877	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	2170.908203	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	182.278656	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	5.78596	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	6.531112	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	7.559179	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	15	gene_12183, gene_12187, gene_12188, gene_12189, gene_12190 ... gene_12191, gene_12192, gene_12196, gene_15442, gene_17548, gene_17551, gene_17554, gene_24845, gene_24846, gene_25838
Amaranthaceae	Beta vulgaris	3	BVRB_4g089380, BVRB_4g089440, BVRB_4g089470
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg18942, Sbi_jg37398
Amaranthaceae	Salicornia europaea	1	Seu_jg5237
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00017413, GOSA_00019875
Amaranthaceae	Suaeda glauca	2	Sgl71537, Sgl75115
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000007277, gene:ENSEOMG00000021246
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.5BG0017610
Apiaceae	Apium graveolens	4	Ag7G02069, Ag7G02073, Ag7G02075, Ag7G02079
Poaceae	Echinochloa crus-galli	15	AH04.789, AH05.386, AH05.3867, AH05.387, AH05.521, AH05.524 ... AH08.355, AH08.358, BH05.446, BH05.447, BH05.578, CH05.509, CH05.511, CH05.652, CH05.655
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_6AG0505720, gene-QOZ80_6BG0457760 ... gene-QOZ80_9AG0677590, gene-QOZ80_9AG0681630, gene-QOZ80_9AG0681670, gene-QOZ80_9AG0681840, gene-QOZ80_9BG0701280, gene-QOZ80_9BG0706470
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.4HG0332610.1, HORVU.MOREX.r3.5HG0420760.1 ... HORVU.MOREX.r3.5HG0420790.1, HORVU.MOREX.r3.7HG0635350.1.CDS1, HORVU.MOREX.r3.7HG0635360.1.CDS1, HORVU.MOREX.r3.7HG0728740.1
Poaceae	Lolium multiflorum	6	gene-QYE76_002231, gene-QYE76_004209, gene-QYE76_019239 ... gene-QYE76_032850, gene-QYE76_032851, gene-QYE76_065541
Poaceae	Oryza coarctata	6	Oco01G015500, Oco01G015510, Oco02G015830, Oco06G016040 ... Oco06G016050, Oco12G004370
Poaceae	Oryza sativa	2	LOC_Os01g45320.1, LOC_Os03g28990.1
Poaceae	Paspalum vaginatum	3	gene-BS78_05G190100, gene-BS78_05G197900, gene-BS78_K170600
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0404275, Pt_Chr0405768, Pt_Chr0405771, Pt_Chr0702313
Poaceae	Sporobolus alterniflorus	6	Chr0G006700, Chr16G006940, Chr16G006950, Chr17G006340 ... Chr18G002690, Chr26G000180
Poaceae	Thinopyrum elongatum	7	Tel2E01G057200, Tel2E01G058700, Tel3E01G845300 ... Tel5E01G025900, Tel6E01G021000, Tel7E01G709900, Tel7E01G748900
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG001950, gene_TRIDC4AG072190 ... gene_TRIDC6AG000790, gene_TRIDC7AG000950, gene_TRIDC7AG001150, gene_TRIDC7AG059450
Poaceae	Triticum aestivum	19	TraesCS2B02G026900.1, TraesCS3B02G577600.1 ... TraesCS3D02G516600.1, TraesCS4A02G484700.1.cds1, TraesCS5A02G011500.1, TraesCS5A02G011700.1, TraesCS5B02G009400.1, TraesCS5B02G009600.1, TraesCS5D02G016400.1, TraesCS5D02G016600.1, TraesCS6A02G006500.1, TraesCS6D02G009300.1, TraesCS7A02G010300.1.cds1, TraesCS7A02G426800.1, TraesCS7B02G327100.1, TraesCS7B02G344600.1, TraesCS7D02G010200.1.cds1, TraesCS7D02G418800.1, TraesCS7D02G434400.1
Poaceae	Zea mays	2	Zm00001eb411520_P001, Zm00001eb418460_P001
Poaceae	Zoysia japonica	4	nbis-gene-38561, nbis-gene-38567, nbis-gene-38695 ... nbis-gene-44305
Poaceae	Zoysia macrostachya	4	Zma_g17879, Zma_g18023, Zma_g18766, Zma_g18826
Portulacaceae	Portulaca oleracea	7	evm.TU.LG02.533, evm.TU.LG02.537, evm.TU.LG02.541 ... evm.TU.LG09.1774, evm.TU.LG09.1777, evm.TU.LG09.1781, evm.TU.LG09.1785
Tamaricaceae	Tamarix chinensis	5	TC04G1425, TC04G1430, TC04G1446, TC04G1452, TC04G1460