halophFGD

Basic Information

Locus ID: Ag7G02072

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: WD40-like Beta Propeller Repeat

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	253220054	253223121	-	Ag7G02072

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.46	81,940.63 Da	34.25	73.74	-0.44

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07676	WD40-like Beta Propeller Repeat	551	565	0.013	IPR011659
Pfam	PF07676	WD40-like Beta Propeller Repeat	611	626	0.014	IPR011659
Pfam	PF07676	WD40-like Beta Propeller Repeat	391	404	0.021	IPR011659
Pfam	PF07676	WD40-like Beta Propeller Repeat	172	204	0.0082	IPR011659
SUPERFAMILY	SSF82171	DPP6 N-terminal domain-like	152	626	1.49E-28	-
Gene3D	G3DSA:2.120.10.30	-	411	693	8.3E-22	IPR011042
Gene3D	G3DSA:2.120.10.30	-	137	331	2.0E-8	IPR011042

Best hit

Source	Best Hit ID	Description
TAIR	AT1G21680.1	DPP6 N-terminal domain-like protein.
RefSeq	XP_017230908.1	PREDICTED: uncharacterized protein LOC108205453 [Daucus carota subsp. sativus]
TrEMBL	A0A166IAD9	Protein TolB OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003576 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	7.673688	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	6.76931	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	4.372989	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	3.662506	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	4.364431	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	2.884209	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	7.53656	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.093268	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	58.602901	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	40.272419	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	50.057232	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	46.414635	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	29.999983	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	27.335226	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	5.362413	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	2.762973	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.080348	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	17.142277	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.074342	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	430.43811	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	545.657532	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.078814	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.111152	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.128316	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.110374	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	2.183284		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.497164		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.694561		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	87.374557		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	56.991558		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	365.296997		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	219.792206		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	4.855392		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	99.994514		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.760481	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.695125	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	7.026364	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	787.008423	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	88.662514	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	58.844929	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	106.699364	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1182.817505	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	22.580463	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	5.934661	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	6.739458	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	6.926188	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	11	gene_12213, gene_12215, gene_12216, gene_7196, gene_7197 ... gene_7198, gene_7199, gene_7200, gene_7201, gene_7202, gene_7203
Amaranthaceae	Atriplex hortensis	1	Ah031551
Amaranthaceae	Beta vulgaris	6	BVRB_4g089400, BVRB_4g089410, BVRB_4g089450, BVRB_4g089460 ... BVRB_4g089520, BVRB_4g089530
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg18938, Sbi_jg18940, Sbi_jg37394, Sbi_jg37395 ... Sbi_jg37396
Amaranthaceae	Salicornia europaea	2	Seu_jg5232, Seu_jg5234
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00017415, GOSA_00017418
Amaranthaceae	Suaeda glauca	7	Sgl23475, Sgl28602, Sgl54511, Sgl54513, Sgl59850, Sgl71538 ... Sgl75116
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000005844, gene:ENSEOMG00000021703 ... gene:ENSEOMG00000025400, gene:ENSEOMG00000033699
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.4AG0023640, CQ.Regalona.r1.5BG0017600 ... CQ.Regalona.r1.7AG0023140, CQ.Regalona.r1.7AG0023150
Apiaceae	Apium graveolens	9	Ag10G01555, Ag3G01091, Ag3G01092, Ag7G02070, Ag7G02072 ... Ag7G02076, Ag7G02077, Ag7G02078, Ag7G02080
Asparagaceae	Asparagus officinalis	2	AsparagusV1_07.2391.V1.1, AsparagusV1_Unassigned.198.V1.1
Poaceae	Echinochloa crus-galli	12	AH04.434, AH05.523, AH05.525, AH08.356, AH08.708, BH05.577 ... BH05.579, CH04.475, CH05.654, CH05.656, Contig1934.2, Contig522.11
Poaceae	Eleusine coracana subsp. coracana	14	gene-QOZ80_4BG0352250, gene-QOZ80_6AG0505730 ... gene-QOZ80_6AG0517360, gene-QOZ80_6BG0457770, gene-QOZ80_6BG0469340, gene-QOZ80_6BG0469350, gene-QOZ80_9AG0677600, gene-QOZ80_9AG0681550, gene-QOZ80_9AG0681610, gene-QOZ80_9AG0681850, gene-QOZ80_9AG0686610, gene-QOZ80_9BG0701290, gene-QOZ80_9BG0706450, gene-QOZ80_9BG0712830
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.4HG0381190.1.CDS1 ... HORVU.MOREX.r3.5HG0420780.1, HORVU.MOREX.r3.7HG0635330.2, HORVU.MOREX.r3.7HG0635370.1
Poaceae	Lolium multiflorum	5	gene-QYE76_002233, gene-QYE76_008565, gene-QYE76_008610 ... gene-QYE76_010254, gene-QYE76_068397
Poaceae	Oryza coarctata	2	Oco05G011910, Oco06G014520
Poaceae	Oryza sativa	3	LOC_Os03g19990.1, LOC_Os03g28980.1, LOC_Os12g24330.1
Poaceae	Paspalum vaginatum	3	gene-BS78_05G244700, gene-BS78_05G265800, gene-BS78_K297700
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0401391, Pt_Chr0401407, Pt_Chr0404116, Pt_Chr0703511
Poaceae	Sporobolus alterniflorus	4	Chr16G007380, Chr17G006720, Chr26G000170, Chr31G004380
Poaceae	Thinopyrum elongatum	9	Tel3E01G844700, Tel5E01G025800, Tel5E01G888400 ... Tel5E01G888500, Tel6E01G109300, Tel6E01G109500, Tel6E01G109800, Tel6E01G113300, Tel7E01G748000
Poaceae	Triticum dicoccoides	12	gene_TRIDC3BG083400, gene_TRIDC4AG047760 ... gene_TRIDC4AG072200, gene_TRIDC5AG001880, gene_TRIDC5BG001630, gene_TRIDC5BG083370, gene_TRIDC6AG006960, gene_TRIDC6BG007070, gene_TRIDC6BG007170, gene_TRIDC6BG009850, gene_TRIDC7AG001000, gene_TRIDC7BG055080
Poaceae	Triticum aestivum	22	TraesCS3B02G577400.1, TraesCS3D02G516400.1 ... TraesCS4A02G124500.1, TraesCS4A02G484600.1, TraesCS4B02G180000.1.cds1, TraesCS5A02G011600.1, TraesCS5B02G009500.1, TraesCS5D02G016500.1, TraesCS5D02G550100.1, TraesCS6A02G057900.1, TraesCS6B02G056200.1, TraesCS6B02G056600.1, TraesCS6B02G057400.1, TraesCS6B02G082900.2, TraesCS6D02G047500.2, TraesCS6D02G047800.2, TraesCS6D02G058200.1, TraesCS7A02G010400.2, TraesCS7B02G344500.1, TraesCS7D02G010100.1, TraesCS7D02G434600.1, TraesCSU02G061800.1
Poaceae	Zea mays	1	Zm00001eb418440_P002
Poaceae	Zoysia japonica	1	nbis-gene-38693
Poaceae	Zoysia macrostachya	1	Zma_g17878
Portulacaceae	Portulaca oleracea	12	evm.TU.LG02.525, evm.TU.LG02.527, evm.TU.LG02.534 ... evm.TU.LG02.535, evm.TU.LG02.538, evm.TU.LG02.542, evm.TU.LG09.1768, evm.TU.LG09.1775, evm.TU.LG09.1778, evm.TU.LG09.1779, evm.TU.LG09.1782, evm.TU.LG09.1786
Posidoniaceae	Posidonia oceanica	4	gene.Posoc07g01380, gene.Posoc07g01390, gene.Posoc07g01450 ... gene.Posoc07g01460
Tamaricaceae	Tamarix chinensis	7	TC04G1422, TC04G1429, TC04G1437, TC04G1443, TC04G1451 ... TC04G1454, TC04G1456