halophFGD

Basic Information

Locus ID: Ag7G02070

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: WD40-like Beta Propeller Repeat

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	253180973	253191589	-	Ag7G02070

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.57	91,063.01 Da	40.70	80.42	-0.42

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07676	WD40-like Beta Propeller Repeat	401	414	0.09	IPR011659
Pfam	PF07676	WD40-like Beta Propeller Repeat	341	355	0.16	IPR011659
Pfam	PF00092	von Willebrand factor type A domain	489	634	6.0E-7	IPR002035
SUPERFAMILY	SSF53300	vWA-like	487	640	8.7E-11	IPR036465
SUPERFAMILY	SSF82171	DPP6 N-terminal domain-like	155	416	1.14E-20	-
Gene3D	G3DSA:2.120.10.30	-	198	429	3.4E-23	IPR011042
Gene3D	G3DSA:3.40.50.410	von Willebrand factor, type A domain	483	642	1.7E-19	IPR036465
ProSiteProfiles	PS50234	VWFA domain profile.	464	648	9.249066	IPR002035
MobiDBLite	mobidb-lite	consensus disorder prediction	783	800	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	774	824	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT4G01870.1	tolB protein-related.
RefSeq	XP_017218427.1	PREDICTED: uncharacterized protein LOC108195918 [Daucus carota subsp. sativus]
TrEMBL	A0A166IAF7	DPPIV_N domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003580 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.881473	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.67737	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.075858	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.248004	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.131802	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.204941	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.032885	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	10.49941	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	4.787866	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	4.311721	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	2.581825	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	3.437575	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	2.021681	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	9.45016	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	9.2995	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	1.979948	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	6.187159	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	5.160789	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	26.138271	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	21.846464	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.136096	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.185075	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.402103	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1.562741	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	1.249281	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.63466	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.966605	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.041733	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.031126		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.025381		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.126178		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	6.091251		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	3.448121		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	15.728058		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	4.526031		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.669574		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	3.21281		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.545402	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	3.222462	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.831849	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	26.683887	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	5.630884	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.901152	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.77484	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	27.756193	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	1.644641	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.191859	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.576238	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.64319	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	11	gene_12213, gene_12215, gene_12216, gene_7196, gene_7197 ... gene_7198, gene_7199, gene_7200, gene_7201, gene_7202, gene_7203
Amaranthaceae	Atriplex hortensis	1	Ah031551
Amaranthaceae	Beta vulgaris	6	BVRB_4g089400, BVRB_4g089410, BVRB_4g089450, BVRB_4g089460 ... BVRB_4g089520, BVRB_4g089530
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg18938, Sbi_jg18940, Sbi_jg37394, Sbi_jg37395 ... Sbi_jg37396
Amaranthaceae	Salicornia europaea	2	Seu_jg5232, Seu_jg5234
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00017415, GOSA_00017418
Amaranthaceae	Suaeda glauca	7	Sgl23475, Sgl28602, Sgl54511, Sgl54513, Sgl59850, Sgl71538 ... Sgl75116
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000005844, gene:ENSEOMG00000021703 ... gene:ENSEOMG00000025400, gene:ENSEOMG00000033699
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.4AG0023640, CQ.Regalona.r1.5BG0017600 ... CQ.Regalona.r1.7AG0023140, CQ.Regalona.r1.7AG0023150
Apiaceae	Apium graveolens	9	Ag10G01555, Ag3G01091, Ag3G01092, Ag7G02070, Ag7G02072 ... Ag7G02076, Ag7G02077, Ag7G02078, Ag7G02080
Asparagaceae	Asparagus officinalis	2	AsparagusV1_07.2391.V1.1, AsparagusV1_Unassigned.198.V1.1
Poaceae	Echinochloa crus-galli	12	AH04.434, AH05.523, AH05.525, AH08.356, AH08.708, BH05.577 ... BH05.579, CH04.475, CH05.654, CH05.656, Contig1934.2, Contig522.11
Poaceae	Eleusine coracana subsp. coracana	14	gene-QOZ80_4BG0352250, gene-QOZ80_6AG0505730 ... gene-QOZ80_6AG0517360, gene-QOZ80_6BG0457770, gene-QOZ80_6BG0469340, gene-QOZ80_6BG0469350, gene-QOZ80_9AG0677600, gene-QOZ80_9AG0681550, gene-QOZ80_9AG0681610, gene-QOZ80_9AG0681850, gene-QOZ80_9AG0686610, gene-QOZ80_9BG0701290, gene-QOZ80_9BG0706450, gene-QOZ80_9BG0712830
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.4HG0381190.1.CDS1 ... HORVU.MOREX.r3.5HG0420780.1, HORVU.MOREX.r3.7HG0635330.2, HORVU.MOREX.r3.7HG0635370.1
Poaceae	Lolium multiflorum	5	gene-QYE76_002233, gene-QYE76_008565, gene-QYE76_008610 ... gene-QYE76_010254, gene-QYE76_068397
Poaceae	Oryza coarctata	2	Oco05G011910, Oco06G014520
Poaceae	Oryza sativa	3	LOC_Os03g19990.1, LOC_Os03g28980.1, LOC_Os12g24330.1
Poaceae	Paspalum vaginatum	3	gene-BS78_05G244700, gene-BS78_05G265800, gene-BS78_K297700
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0401391, Pt_Chr0401407, Pt_Chr0404116, Pt_Chr0703511
Poaceae	Sporobolus alterniflorus	4	Chr16G007380, Chr17G006720, Chr26G000170, Chr31G004380
Poaceae	Thinopyrum elongatum	9	Tel3E01G844700, Tel5E01G025800, Tel5E01G888400 ... Tel5E01G888500, Tel6E01G109300, Tel6E01G109500, Tel6E01G109800, Tel6E01G113300, Tel7E01G748000
Poaceae	Triticum dicoccoides	12	gene_TRIDC3BG083400, gene_TRIDC4AG047760 ... gene_TRIDC4AG072200, gene_TRIDC5AG001880, gene_TRIDC5BG001630, gene_TRIDC5BG083370, gene_TRIDC6AG006960, gene_TRIDC6BG007070, gene_TRIDC6BG007170, gene_TRIDC6BG009850, gene_TRIDC7AG001000, gene_TRIDC7BG055080
Poaceae	Triticum aestivum	22	TraesCS3B02G577400.1, TraesCS3D02G516400.1 ... TraesCS4A02G124500.1, TraesCS4A02G484600.1, TraesCS4B02G180000.1.cds1, TraesCS5A02G011600.1, TraesCS5B02G009500.1, TraesCS5D02G016500.1, TraesCS5D02G550100.1, TraesCS6A02G057900.1, TraesCS6B02G056200.1, TraesCS6B02G056600.1, TraesCS6B02G057400.1, TraesCS6B02G082900.2, TraesCS6D02G047500.2, TraesCS6D02G047800.2, TraesCS6D02G058200.1, TraesCS7A02G010400.2, TraesCS7B02G344500.1, TraesCS7D02G010100.1, TraesCS7D02G434600.1, TraesCSU02G061800.1
Poaceae	Zea mays	1	Zm00001eb418440_P002
Poaceae	Zoysia japonica	1	nbis-gene-38693
Poaceae	Zoysia macrostachya	1	Zma_g17878
Portulacaceae	Portulaca oleracea	12	evm.TU.LG02.525, evm.TU.LG02.527, evm.TU.LG02.534 ... evm.TU.LG02.535, evm.TU.LG02.538, evm.TU.LG02.542, evm.TU.LG09.1768, evm.TU.LG09.1775, evm.TU.LG09.1778, evm.TU.LG09.1779, evm.TU.LG09.1782, evm.TU.LG09.1786
Posidoniaceae	Posidonia oceanica	4	gene.Posoc07g01380, gene.Posoc07g01390, gene.Posoc07g01450 ... gene.Posoc07g01460
Tamaricaceae	Tamarix chinensis	7	TC04G1422, TC04G1429, TC04G1437, TC04G1443, TC04G1451 ... TC04G1454, TC04G1456