halophFGD

Basic Information

Locus ID: Ag7G02069

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: von Willebrand factor type A domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	253153904	253155984	-	Ag7G02069

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.29	44,990.28 Da	41.94	89.73	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00092	von Willebrand factor type A domain	65	236	8.2E-11	IPR002035
SUPERFAMILY	SSF53300	vWA-like	60	239	3.59E-17	IPR036465
Gene3D	G3DSA:3.40.50.410	von Willebrand factor, type A domain	66	242	3.6E-22	IPR036465
SMART	SM00327	VWA_4	63	244	1.5E-8	IPR002035
ProSiteProfiles	PS50234	VWFA domain profile.	65	239	13.070545	IPR002035

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017218190.1	PREDICTED: uncharacterized protein LOC108195736 [Daucus carota subsp. sativus]	0
TrEMBL	A0A166IAI7	VWFA domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003583 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	3.749577	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	3.082084	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.527362	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.644374	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.75772	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.710158	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.968113	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.034069	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	5.786253	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	6.172272	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	7.078784	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	7.917258	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	4.262665	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	4.120088	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	5.825418	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	16.552483	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	4.440701	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	12.801092	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	15.735106	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	28.818432	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	27.848747	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	2.387028	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	2.82387	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	5.655635	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	13.96696	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	4.528927	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	4.747624	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	2.008429	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.837095		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.941408		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	3.050131		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	5.547103		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	5.125938		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	4.014971		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.176283		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.262167		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.049842		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.114573	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.102464	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	10.723845	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	46.749187	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	75.532608	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	66.486351	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	18.864218	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	46.933113	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	2.839336	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	2.716135	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	3.4577	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	15	gene_12183, gene_12187, gene_12188, gene_12189, gene_12190 ... gene_12191, gene_12192, gene_12196, gene_15442, gene_17548, gene_17551, gene_17554, gene_24845, gene_24846, gene_25838
Amaranthaceae	Beta vulgaris	3	BVRB_4g089380, BVRB_4g089440, BVRB_4g089470
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg18942, Sbi_jg37398
Amaranthaceae	Salicornia europaea	1	Seu_jg5237
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00017413, GOSA_00019875
Amaranthaceae	Suaeda glauca	2	Sgl71537, Sgl75115
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000007277, gene:ENSEOMG00000021246
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.5BG0017610
Apiaceae	Apium graveolens	4	Ag7G02069, Ag7G02073, Ag7G02075, Ag7G02079
Poaceae	Echinochloa crus-galli	15	AH04.789, AH05.386, AH05.3867, AH05.387, AH05.521, AH05.524 ... AH08.355, AH08.358, BH05.446, BH05.447, BH05.578, CH05.509, CH05.511, CH05.652, CH05.655
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_6AG0505720, gene-QOZ80_6BG0457760 ... gene-QOZ80_9AG0677590, gene-QOZ80_9AG0681630, gene-QOZ80_9AG0681670, gene-QOZ80_9AG0681840, gene-QOZ80_9BG0701280, gene-QOZ80_9BG0706470
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.4HG0332610.1, HORVU.MOREX.r3.5HG0420760.1 ... HORVU.MOREX.r3.5HG0420790.1, HORVU.MOREX.r3.7HG0635350.1.CDS1, HORVU.MOREX.r3.7HG0635360.1.CDS1, HORVU.MOREX.r3.7HG0728740.1
Poaceae	Lolium multiflorum	6	gene-QYE76_002231, gene-QYE76_004209, gene-QYE76_019239 ... gene-QYE76_032850, gene-QYE76_032851, gene-QYE76_065541
Poaceae	Oryza coarctata	6	Oco01G015500, Oco01G015510, Oco02G015830, Oco06G016040 ... Oco06G016050, Oco12G004370
Poaceae	Oryza sativa	2	LOC_Os01g45320.1, LOC_Os03g28990.1
Poaceae	Paspalum vaginatum	3	gene-BS78_05G190100, gene-BS78_05G197900, gene-BS78_K170600
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0404275, Pt_Chr0405768, Pt_Chr0405771, Pt_Chr0702313
Poaceae	Sporobolus alterniflorus	6	Chr0G006700, Chr16G006940, Chr16G006950, Chr17G006340 ... Chr18G002690, Chr26G000180
Poaceae	Thinopyrum elongatum	7	Tel2E01G057200, Tel2E01G058700, Tel3E01G845300 ... Tel5E01G025900, Tel6E01G021000, Tel7E01G709900, Tel7E01G748900
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG001950, gene_TRIDC4AG072190 ... gene_TRIDC6AG000790, gene_TRIDC7AG000950, gene_TRIDC7AG001150, gene_TRIDC7AG059450
Poaceae	Triticum aestivum	19	TraesCS2B02G026900.1, TraesCS3B02G577600.1 ... TraesCS3D02G516600.1, TraesCS4A02G484700.1.cds1, TraesCS5A02G011500.1, TraesCS5A02G011700.1, TraesCS5B02G009400.1, TraesCS5B02G009600.1, TraesCS5D02G016400.1, TraesCS5D02G016600.1, TraesCS6A02G006500.1, TraesCS6D02G009300.1, TraesCS7A02G010300.1.cds1, TraesCS7A02G426800.1, TraesCS7B02G327100.1, TraesCS7B02G344600.1, TraesCS7D02G010200.1.cds1, TraesCS7D02G418800.1, TraesCS7D02G434400.1
Poaceae	Zea mays	2	Zm00001eb411520_P001, Zm00001eb418460_P001
Poaceae	Zoysia japonica	4	nbis-gene-38561, nbis-gene-38567, nbis-gene-38695 ... nbis-gene-44305
Poaceae	Zoysia macrostachya	4	Zma_g17879, Zma_g18023, Zma_g18766, Zma_g18826
Portulacaceae	Portulaca oleracea	7	evm.TU.LG02.533, evm.TU.LG02.537, evm.TU.LG02.541 ... evm.TU.LG09.1774, evm.TU.LG09.1777, evm.TU.LG09.1781, evm.TU.LG09.1785
Tamaricaceae	Tamarix chinensis	5	TC04G1425, TC04G1430, TC04G1446, TC04G1452, TC04G1460