Basic Information
Locus ID:
Ag7G02041
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Diphthamide synthase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 250240682 | 250248800 | + | Ag7G02041 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 82,183.89 Da | 35.66 | 97.29 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01994 | Alpha_ANH_like_IV | 2 | 214 | 1.29821E-92 | IPR002761 |
| CDD | cd06156 | eu_AANH_C_2 | 434 | 558 | 3.61837E-23 | - |
| Pfam | PF01902 | Diphthamide synthase | 1 | 230 | 4.0E-36 | IPR002761 |
| Pfam | PF01042 | Endoribonuclease L-PSP | 427 | 488 | 1.5E-7 | IPR006175 |
| Pfam | PF01042 | Endoribonuclease L-PSP | 321 | 394 | 6.6E-8 | IPR006175 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 1 | 241 | 7.33E-65 | - |
| SUPERFAMILY | SSF55298 | YjgF-like | 416 | 560 | 2.83E-15 | IPR035959 |
| SUPERFAMILY | SSF55298 | YjgF-like | 323 | 397 | 5.65E-10 | IPR035959 |
| Gene3D | G3DSA:3.30.1330.40 | - | 412 | 559 | 2.9E-19 | IPR035959 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 1 | 157 | 3.2E-54 | IPR014729 |
| Gene3D | G3DSA:3.90.1490.10 | - | 160 | 257 | 1.2E-28 | - |
| Gene3D | G3DSA:3.30.1330.40 | - | 300 | 411 | 1.6E-8 | IPR035959 |
| TIGRFAM | TIGR00290 | MJ0570_dom: MJ0570-related uncharacterized domain | 1 | 231 | 8.3E-61 | IPR002761 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04480.1 | endoribonucleases. | 0 |
| RefSeq | XP_017229891.1 | PREDICTED: diphthine--ammonia ligase [Daucus carota subsp. sativus] | 0 |
| A2RV01 | Diphthine--ammonia ligase OS=Danio rerio OX=7955 GN=dph6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166I9H9 | Diphthine--ammonia ligase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003547 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.765411 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.557996 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.413362 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.257426 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.960794 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.91927 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.093784 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.816609 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 17.520884 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 17.503086 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 20.821396 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 16.34112 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 16.641314 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.894657 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.600276 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.390189 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.037256 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.1662 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.79048 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.8548 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.102674 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.483257 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.651389 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.767396 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.609352 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 8.128446 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.040167 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.728307 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.632169 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.884374 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.977629 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.880256 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.678728 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.245223 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.926999 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.955584 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.451153 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.209897 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.410399 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.005208 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.431028 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 6.983895 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.040115 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 9.941549 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 9.090058 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.353619 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 8.311358 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.171556 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 10.499982 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.143853 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2647 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9932 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009750 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g214790 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12124, Sbi_jg47061, Sbi_jg47063, Sbi_jg47064 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg21343, Seu_jg21346 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020362 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl56126, Sgl61534, Sgl61557, Sgl83267 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013776, gene:ENSEOMG00000039777 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0003600, CQ.Regalona.r1.9AG0020970 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30090960 |
| Apiaceae | Apium graveolens | 1 | Ag7G02041 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G009870 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721763 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.930.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G22525 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G04480.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020155m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g03330.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g059070.2N, BniB01g059080.2N, BniB07g033700.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1652 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1711 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g04350 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0199s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g08710 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2190 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019032 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G07031 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3898, BH07.3698, CH07.3767 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0149860, gene-QOZ80_2BG0204330 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0627770.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_026720 |
| Poaceae | Oryza coarctata | 1 | Oco03G024860 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g56565.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G314100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0604148, Pt_Chr0604207 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr09G017110, Chr0G008850, Chr13G001200 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G683300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG056270, gene_TRIDC6BG065750 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G378100.1, TraesCS6B02G415800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb258450_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39847 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17384 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.444, evm.TU.LG22.1458 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g09600 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1897 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3299 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2704 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13818 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.155 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005823 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12883 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16295 |
| Salicaceae | Populus euphratica | 4 | populus_peu15983, populus_peu15984, populus_peu15985 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614059 |
| Solanaceae | Solanum chilense | 1 | SOLCI006204800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018291 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6021 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3354 |
| Zosteraceae | Zostera marina | 3 | Zosma03g32730.v3.1, Zosma03g32790.v3.1, Zosma03g32800.v3.1 |