Basic Information
Locus ID:
Ag7G01996
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
SCY1-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 246871258 | 246883260 | + | Ag7G01996 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 101,095.77 Da | 44.90 | 86.61 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14011 | PK_SCY1_like | 45 | 347 | 2.96807E-99 | - |
| Pfam | PF00069 | Protein kinase domain | 103 | 345 | 9.2E-23 | IPR000719 |
| SUPERFAMILY | SSF48371 | ARM repeat | 347 | 607 | 3.17E-12 | IPR016024 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 36 | 349 | 2.45E-36 | IPR011009 |
| Gene3D | G3DSA:1.25.10.10 | - | 350 | 622 | 3.9E-38 | IPR011989 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 104 | 349 | 7.4E-31 | - |
| SMART | SM00220 | serkin_6 | 39 | 345 | 4.9E-11 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 39 | 345 | 25.290686 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 907 | 926 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 646 | 664 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 874 | 933 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 642 | 683 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G22870.1 | Protein kinase family protein with ARM repeat domain. | 0 |
| RefSeq | XP_017225154.1 | PREDICTED: SCY1-like protein 2 [Daucus carota subsp. sativus] | 0 |
| F4I313 | SCY1-like protein 2 A OS=Arabidopsis thaliana OX=3702 GN=SCYL2A PE=1 SV=1 | 0 | |
| TrEMBL | A0A166I8B1 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003511 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 21.172211 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 18.061823 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 18.501556 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 19.922609 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 20.476547 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 18.249119 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 16.988853 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 15.067372 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 29.163643 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 30.742197 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 31.77582 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 29.037069 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 27.645439 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 28.402124 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 21.814402 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 24.670479 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 21.532654 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 26.872766 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 19.695179 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 25.136482 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 25.104317 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 23.180429 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 22.461834 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 20.25112 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 22.045013 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 26.573935 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 26.412361 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 20.313334 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 25.193697 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.162488 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.934828 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.027407 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 16.510571 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 12.977789 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 16.042965 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 10.382481 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 7.488616 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.980828 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 19.157265 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 14.680758 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.357629 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 30.716082 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 32.155277 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 34.195045 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 32.027145 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 27.421656 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 27.913923 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 22.165272 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 26.489353 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 21.750315 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg12288, jg23322 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14307 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah024010 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g009710 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg28515, Sbi_jg2866 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7042 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022060 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl11729, Sgl11888, Sgl17218 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014369, gene:ENSEOMG00000035323 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0012400, CQ.Regalona.r1.1BG0013630 |
| Apiaceae | Apium graveolens | 1 | Ag7G01996 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G002790 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103695938 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2762.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G29818 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G22870.1, AT1G71410.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006737m.g.v1.0, Thhalv10018097m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g20350.v2.2, Sp5g26570.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g049320.2N, BniB04g038140.2N, BniB05g068950.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1660 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1715 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g01610 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0389s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g14920 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1859 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1233 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021964 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03756 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2331, BH02.2439, CH02.2615 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0024570, gene-QOZ80_1BG0075190 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0271640.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053845 |
| Poaceae | Oryza coarctata | 2 | Oco01G014540, Oco02G014870 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g42950.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G195000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0603334 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G015420, Chr05G018420, Chr08G011270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G379500 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2BG070740, gene_TRIDC3AG033270 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G221700.2, TraesCS3B02G251500.3 ... |
| Poaceae | Zea mays | 2 | Zm00001eb162090_P001, Zm00001eb358200_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-29243 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8218 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1167, evm.TU.LG20.1377 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g09350 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.406 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9854 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2291 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18000 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.735 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002918 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3266 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11218 |
| Salicaceae | Populus euphratica | 4 | populus_peu16467, populus_peu18070, populus_peu18946 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132606201 |
| Solanaceae | Solanum chilense | 1 | SOLCI006700900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004594 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8557 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1192 |
| Zosteraceae | Zostera marina | 1 | Zosma05g06330.v3.1 |