Basic Information
Locus ID:
Ag7G01966
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
mitogen-activated protein kinase kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 236202080 | 236210497 | - | Ag7G01966 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 57,527.29 Da | 42.47 | 90.73 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06623 | PKc_MAPKK_plant_like | 80 | 344 | 5.98983E-146 | - |
| Pfam | PF00069 | Protein kinase domain | 86 | 339 | 2.3E-58 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 86 | 369 | 3.91E-72 | IPR011009 |
| SUPERFAMILY | SSF54427 | NTF2-like | 364 | 461 | 6.57E-11 | IPR032710 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 160 | 350 | 2.5E-55 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 54 | 159 | 2.4E-16 | - |
| Gene3D | G3DSA:3.10.450.50 | - | 358 | 517 | 1.8E-11 | - |
| SMART | SM00220 | serkin_6 | 83 | 339 | 1.4E-76 | IPR000719 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 366 | 516 | 16.079878 | IPR018222 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 83 | 339 | 44.640133 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 89 | 112 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 203 | 215 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40440.1 | mitogen-activated protein kinase kinase 3. encodes a mitogen-activated protein kinase kinase | 0 |
| RefSeq | XP_017229770.1 | PREDICTED: mitogen-activated protein kinase kinase 3 [Daucus carota subsp. sativus] | 0 |
| O80396 | Mitogen-activated protein kinase kinase 3 OS=Arabidopsis thaliana OX=3702 GN=MKK3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166G1J2 | Mitogen-activated protein kinase kinase 3 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000981 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 63.310242 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 37.101093 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 36.217087 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 36.762226 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 37.134068 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 41.769505 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 39.346798 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 32.688335 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 37.189507 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 40.889576 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 41.694386 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 42.523724 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 37.158733 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 33.866451 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 27.760815 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 31.157166 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 32.313663 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 33.387703 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 37.026089 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 25.620443 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 37.029018 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 40.676395 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 42.807255 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 40.587124 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 40.491188 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 42.761127 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 36.972267 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 38.945408 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 45.188278 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 17.718418 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 23.832771 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 20.245291 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 29.560198 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 28.154774 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 33.614155 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 17.769451 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 12.165938 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 12.705203 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 28.482079 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 22.360544 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 21.766132 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 28.21847 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 32.373791 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 36.975674 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 39.077103 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 28.195528 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 40.217163 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 55.180309 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 57.145195 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 61.79258 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25868 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12217 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008881 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g088910 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18297, Sbi_jg36682 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4636 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017453 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23446, Sgl23564, Sgl28572, Sgl28747 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010489, gene:ENSEOMG00000028985 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0022020, CQ.Regalona.r1.4AG0023370 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30022960 |
| Apiaceae | Apium graveolens | 1 | Ag7G01966 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G010800 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703776 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.571.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G11805 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G40440.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027723m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g01490.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g026340.2N, BniB03g057860.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1872 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1951 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g08150 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0583s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g23400 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.305 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00041435 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G05107, Lb5G28346, Lb5G28351 |
| Poaceae | Echinochloa crus-galli | 8 | AH07.3340, AH08.1663, AH08.1664, BH07.3165, BH08.1713 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0520570, gene-QOZ80_6BG0473050 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.5HG0457350.1, HORVU.MOREX.r3.5HG0537390.1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_001844 |
| Poaceae | Oryza coarctata | 1 | Oco12G009050 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g27890.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G418000, gene-BS78_02G161600 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0106911, Pt_Chr0207483, Pt_Chr0703880 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G002620, Chr11G016170, Chr31G003810 |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G102700, Tel5E01G225500, Tel5E01G890300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG047480, gene_TRIDC5AG020820 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS5A02G122700.4, TraesCS5B02G122600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb133330_P001, Zm00001eb217030_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43796 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g23044, Zma_g31871 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.499, evm.TU.LG09.1743 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g23590 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1918, evm.TU.Scaffold_6_RagTag.126 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14940 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17415, nbisL1-mrna-628 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-110, nbisL1-mrna-3087 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.90, evm.TU.utg000019l.66 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002039, Maker00006949 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11884, nbisL1-mrna-12037 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17472 |
| Salicaceae | Populus euphratica | 2 | populus_peu01076, populus_peu01083 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632449 |
| Solanaceae | Solanum chilense | 1 | SOLCI005915500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015234 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_935 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0957 |
| Zosteraceae | Zostera marina | 1 | Zosma01g31760.v3.1 |