halophFGD

Basic Information

Locus ID: Ag7G01921

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	229250948	229254875	+	Ag7G01921

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.76	113,557.54 Da	32.29	104.11	0.01

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	694	973	7.3E-45	IPR000719
Pfam	PF08263	Leucine rich repeat N-terminal domain	34	70	1.9E-6	IPR013210
Pfam	PF13855	Leucine rich repeat	528	586	6.0E-9	IPR001611
Pfam	PF00560	Leucine Rich Repeat	243	261	0.38	IPR001611
SUPERFAMILY	SSF52058	L domain-like	41	374	7.48E-56	-
SUPERFAMILY	SSF52058	L domain-like	291	597	1.74E-47	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	684	975	1.35E-71	IPR011009
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	209	456	3.9E-63	IPR032675
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	772	992	3.9E-60	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	32	208	5.3E-44	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	457	639	3.8E-39	IPR032675
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	674	771	1.6E-18	-
SMART	SM00369	LRR_typ_2	312	336	160.0	IPR003591
SMART	SM00220	serkin_6	692	974	1.3E-30	IPR000719
SMART	SM00369	LRR_typ_2	168	192	160.0	IPR003591
SMART	SM00369	LRR_typ_2	550	574	12.0	IPR003591
SMART	SM00369	LRR_typ_2	241	265	0.48	IPR003591
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	243	265	7.758159	IPR001611
ProSiteProfiles	PS50011	Protein kinase domain profile.	692	982	36.060795	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	827	839	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	698	722	-	IPR017441
PRINTS	PR00019	Leucine-rich repeat signature	291	304	2.6E-5	-
PRINTS	PR00019	Leucine-rich repeat signature	550	563	2.6E-5	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K00924 (receptor protein kinase TMK [EC:2.7.11.1])

Best hit

Source	Best Hit ID	Description
TAIR	AT5G25930.1	Protein kinase family protein with leucine-rich repeat domain.
RefSeq	XP_017225636.1	PREDICTED: receptor-like protein kinase HSL1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9FGL5	Receptor protein-tyrosine kinase CEPR1 OS=Arabidopsis thaliana OX=3702 GN=CEPR1 PE=1 SV=1
TrEMBL	A0A166HUY8	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003078 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	18.959599	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	21.537426	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	16.086609	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	21.157419	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	20.102591	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	20.932516	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	19.712091	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	17.444019	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	65.211792	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	64.040077	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	70.526535	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	51.591568	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	44.426441	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	29.605007	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	5.54173	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	7.959182	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	6.176157	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	21.767807	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	12.550362	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	27.311876	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	29.377228	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	12.441913	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	14.89204	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	13.621461	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	14.791643	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	19.155294	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	13.782968	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	13.56365	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	14.094997	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	13.008245		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	16.900043		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	14.451555		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	37.710667		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	21.069775		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	32.07988		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	23.900986		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	15.179919		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	17.446119		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	30.16069	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	22.081699	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	13.532767	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	42.586136	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	57.836281	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	32.237751	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	26.618296	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	43.10099	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	27.271961	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	17.006617	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	17.611832	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	17.848116	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg23899, jg23902, jg23903, jg31658, jg32970, jg4549
Aizoaceae	Mesembryanthemum crystallinum	16	gene_12923, gene_12924, gene_13201, gene_13202, gene_13203 ... gene_13204, gene_13223, gene_13224, gene_13225, gene_8122, gene_8123, gene_8124, gene_8125, gene_8126, gene_8127, gene_8128
Amaranthaceae	Atriplex hortensis	3	Ah035058, Ah035062, Ah035064
Amaranthaceae	Beta vulgaris	4	BVRB_2g032780, BVRB_2g032790, BVRB_2g032800, BVRB_2g032810
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg20913, Sbi_jg22871
Amaranthaceae	Salicornia europaea	1	Seu_jg16733
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00018166
Amaranthaceae	Suaeda glauca	2	Sgl62289, Sgl66836
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000018127, gene:ENSEOMG00000018775 ... gene:ENSEOMG00000019088, gene:ENSEOMG00000019717, gene:ENSEOMG00000020085, gene:ENSEOMG00000047937, gene:ENSEOMG00000049253, gene:ENSEOMG00000051765
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.2AG0015020, CQ.Regalona.r1.2AG0015040 ... CQ.Regalona.r1.2AG0015050, CQ.Regalona.r1.2BG0017130, CQ.Regalona.r1.2BG0017140, CQ.Regalona.r1.2BG0017150, CQ.Regalona.r1.2BG0017160
Anacardiaceae	Pistacia vera	12	pistato.v30168210, pistato.v30168230, pistato.v30254050 ... pistato.v30254070, pistato.v30254100, pistato.v30254130, pistato.v30257250, pistato.v30257260, pistato.v30257300, pistato.v30257330, pistato.v30257340, pistato.v30257350
Apiaceae	Apium graveolens	5	Ag7G00332, Ag7G01921, Ag8G00329, Ag9G01447, Ag9G02626
Arecaceae	Cocos nucifera	6	COCNU_02G001660, COCNU_03G014930, COCNU_06G004330 ... COCNU_06G004340, COCNU_14G002970, scaffold017116G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103698393, gene-LOC103700466, gene-LOC103706753 ... gene-LOC103710231, gene-LOC120112395
Asparagaceae	Asparagus officinalis	3	AsparagusV1_05.2682.V1.1, AsparagusV1_06.1208.V1.1 ... AsparagusV1_06.1209.V1.1
Asteraceae	Flaveria trinervia	4	Ftri14G22916, Ftri15G06208, Ftri16G03105, Ftri7G05435
Brassicaceae	Arabidopsis thaliana	1	AT5G25930.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10003585m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp2g21740.v2.2
Brassicaceae	Brassica nigra	4	BniB02g078280.2N, BniB02g078290.2N, BniB02g078300.2N ... BniB04g004140.2N
Casuarinaceae	Casuarina equisetifolia	9	Ceq01G0058, Ceq01G0062, Ceq03G0037, Ceq03G0038, Ceq03G0039 ... Ceq03G0040, Ceq04G2063, Ceq06G0067, Ceq06G1562
Casuarinaceae	Casuarina glauca	6	Cgl01G0022, Cgl03G0046, Cgl04G2257, Cgl06G0074, Cgl06G1619 ... Cgl06G1621
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno12g02450, gene.Cymno16g03820
Dunaliellaceae	Dunaliella salina	1	Dusal.0324s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate07g16860, gene.Thate09g16420, gene.Thate09g16430
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-252
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG07.1159, evm.TU.LG07.840
Plantaginaceae	Plantago ovata	2	Pov_00003450, Pov_00013571
Plumbaginaceae	Limonium bicolor	6	Lb1G04714, Lb1G04727, Lb1G05171, Lb1G05195, Lb2G14154 ... Lb3G21111
Poaceae	Echinochloa crus-galli	22	AH02.3138, AH02.3139, AH05.1684, AH05.360, AH06.2008 ... AH06.2009, AH06.2296, AH07.1041, BH01.5239, BH02.3203, BH02.3204, BH05.1831, BH05.417, BH06.1839, BH07.3954, CH02.3314, CH02.3317, CH05.1927, CH05.477, CH06.2028, CH07.766, CH07.939
Poaceae	Eleusine coracana subsp. coracana	19	gene-QOZ80_1AG0032710, gene-QOZ80_1BG0082870 ... gene-QOZ80_2AG0106610, gene-QOZ80_2AG0107050, gene-QOZ80_2AG0108010, gene-QOZ80_2BG0160680, gene-QOZ80_2BG0161640, gene-QOZ80_4AG0303360, gene-QOZ80_4BG0334250, gene-QOZ80_4BG0334280, gene-QOZ80_5AG0366080, gene-QOZ80_5AG0383890, gene-QOZ80_5BG0413900, gene-QOZ80_5BG0430690, gene-QOZ80_5BG0449760, gene-QOZ80_6AG0542820, gene-QOZ80_6AG0542830, gene-QOZ80_6BG0496020, gene-QOZ80_6BG0496030
Poaceae	Hordeum vulgare	11	HORVU.MOREX.r3.1HG0006720.1.CDS1 ... HORVU.MOREX.r3.1HG0006740.1.CDS1, HORVU.MOREX.r3.1HG0006770.1.CDS1, HORVU.MOREX.r3.1HG0076630.1, HORVU.MOREX.r3.3HG0287850.1, HORVU.MOREX.r3.6HG0580210.1, HORVU.MOREX.r3.6HG0624460.1, HORVU.MOREX.r3.7HG0637550.1.CDS1, HORVU.MOREX.r3.7HG0648000.1, HORVU.MOREX.r3.7HG0673710.1, HORVU.MOREX.r3.7HG0718040.1
Poaceae	Lolium multiflorum	5	gene-QYE76_015921, gene-QYE76_015986, gene-QYE76_034443 ... gene-QYE76_034447, gene-QYE76_055320
Poaceae	Oryza coarctata	12	Oco02G020350, Oco03G005860, Oco03G006080, Oco04G006080 ... Oco04G006330, Oco04G006340, Oco09G014620, Oco10G014600, Oco11G011100, Oco12G011190, Oco12G011200, Oco12G011210
Poaceae	Oryza sativa	10	LOC_Os01g53920.1, LOC_Os02g12910.1, LOC_Os02g13420.1 ... LOC_Os02g13430.1, LOC_Os02g13460.1, LOC_Os02g13510.1, LOC_Os05g44770.1, LOC_Os06g36270.3, LOC_Os06g36310.1, LOC_Os06g36320.1
Poaceae	Paspalum vaginatum	12	gene-BS78_03G271900, gene-BS78_03G272000, gene-BS78_K050100 ... gene-BS78_04G094300, gene-BS78_04G105500, gene-BS78_07G030600, gene-BS78_08G053400, gene-BS78_08G053600, gene-BS78_08G123500, gene-BS78_09G207700, gene-BS78_10G165200, gene-BS78_10G165300
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0102051, Pt_Chr0102884, Pt_Chr0400441, Pt_Chr0400452 ... Pt_Chr0504113, Pt_Chr0600213, Pt_Chr0602247, Pt_Chr0602287, Pt_Chr0605380
Poaceae	Sporobolus alterniflorus	10	Chr02G028940, Chr03G015800, Chr05G006600, Chr05G023380 ... Chr08G015900, Chr0G009790, Chr10G009440, Chr15G023290, Chr18G014300, Chr22G003240
Poaceae	Thinopyrum elongatum	5	Tel3E01G455700, Tel5E01G585000, Tel7E01G173400 ... Tel7E01G625700, Telscf48801G000100
Poaceae	Triticum dicoccoides	13	gene_TRIDC1AG050590, gene_TRIDC1BG057420 ... gene_TRIDC2BG000240, gene_TRIDC3AG021220, gene_TRIDC3AG041020, gene_TRIDC3BG046270, gene_TRIDC4AG060560, gene_TRIDC5BG057730, gene_TRIDC6AG027350, gene_TRIDC6AG053870, gene_TRIDC6BG033510, gene_TRIDC7AG049870, gene_TRIDC7BG043940
Poaceae	Triticum aestivum	28	TraesCS1A02G342600.1, TraesCS1B02G355700.1 ... TraesCS1D02G344700.1, TraesCS2A02G001700.1.cds1, TraesCS2B02G021400.1.cds1, TraesCS3A02G276200.2, TraesCS3B02G309900.1, TraesCS3B02G310000.1, TraesCS3D02G276100.1, TraesCS3D02G276200.2, TraesCS4A02G380300.2, TraesCS4A02G381100.1, TraesCS6A02G187400.1, TraesCS6A02G359600.2, TraesCS6B02G217100.1, TraesCS6B02G392500.1, TraesCS6D02G174300.1, TraesCS6D02G342500.1, TraesCS6D02G342600.1.cds1, TraesCS7A02G028300.1.cds1, TraesCS7A02G082600.1, TraesCS7A02G356900.1, TraesCS7B02G270900.1, TraesCS7D02G077200.1, TraesCS7D02G365800.1, TraesCSU02G101700.1.cds1, TraesCSU02G175600.1, TraesCSU02G214400.1
Poaceae	Zea mays	7	Zm00001eb083330_P001, Zm00001eb153630_P001 ... Zm00001eb204350_P002, Zm00001eb239600_P001, Zm00001eb277420_P001, Zm00001eb293660_P001, Zm00001eb384580_P002
Poaceae	Zoysia japonica	5	nbis-gene-13874, nbis-gene-22917, nbis-gene-34193 ... nbis-gene-41200, nbis-gene-41201
Poaceae	Zoysia macrostachya	7	Zma_g15394, Zma_g15433, Zma_g20487, Zma_g24841, Zma_g27250 ... Zma_g32940, Zma_g8624
Portulacaceae	Portulaca oleracea	10	evm.TU.LG07.719, evm.TU.LG07.720, evm.TU.LG07.722 ... evm.TU.LG07.724, evm.TU.LG07.725, evm.TU.LG15.212, evm.TU.LG15.213, evm.TU.LG15.215, evm.TU.LG15.216, evm.TU.LG15.217
Posidoniaceae	Posidonia oceanica	4	gene.Posoc08g12490, gene.Posoc08g12500, gene.Posoc09g06650 ... gene.Posoc09g06660
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_10_RagTag.752, evm.TU.Scaffold_4_RagTag.1896
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-13739, nbisL1-mrna-13742
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-14173
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-4670, nbisL1-mrna-8996
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000008l.1081, evm.TU.utg000033l.526
Rhizophoraceae	Kandelia obovata	2	Maker00001236, Maker00015187
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-22721, nbisL1-mrna-3859
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-1181, nbisL1-mrna-7972
Salicaceae	Populus euphratica	12	populus_peu04986, populus_peu04987, populus_peu05355 ... populus_peu05356, populus_peu05357, populus_peu05367, populus_peu05368, populus_peu05369, populus_peu05371, populus_peu05381, populus_peu05382, populus_peu12719
Solanaceae	Lycium barbarum	12	gene-LOC132599916, gene-LOC132600349, gene-LOC132600351 ... gene-LOC132635782, gene-LOC132635834, gene-LOC132635843, gene-LOC132636645, gene-LOC132636830, gene-LOC132636831, gene-LOC132636834, gene-LOC132637392, gene-LOC132637398
Solanaceae	Solanum chilense	3	SOLCI004927300, SOLCI005823900, SOLCI006937100
Solanaceae	Solanum pennellii	4	gene-LOC107007675, gene-LOC107027903, gene-LOC107028118 ... gene-LOC107028124
Tamaricaceae	Reaumuria soongarica	1	STRG.4720_chr03_-
Tamaricaceae	Tamarix chinensis	1	TC01G2578
Zosteraceae	Zostera marina	4	Zosma04g09240.v3.1, Zosma05g13120.v3.1, Zosma05g13230.v3.1 ... Zosma05g13270.v3.1