halophFGD

Basic Information

Locus ID: Ag7G01895

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: CCR4-associated factor 1 homolog

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	226377490	226378866	-	Ag7G01895

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.67	31,643.60 Da	35.55	89.31	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF04857	CAF1 family ribonuclease	16	137	3.1E-11	IPR006941
SUPERFAMILY	SSF53098	Ribonuclease H-like	13	266	1.03E-89	IPR012337
Gene3D	G3DSA:3.30.420.10	-	1	269	6.6E-99	IPR036397

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding)

KEGG Pathway

KO Term:

K12581 (CCR4-NOT transcription complex subunit 7/8)

Pathway:

ko03018 (RNA degradation) map03018 (RNA degradation)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G32070.1	Polynucleotidyl transferase, ribonuclease H-like superfamily protein.
RefSeq	XP_017229973.1	PREDICTED: probable CCR4-associated factor 1 homolog 7 [Daucus carota subsp. sativus]
Swiss-Prot	Q9SKZ2	Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2
TrEMBL	A0A166HVV6	poly(A)-specific ribonuclease OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003111 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	27.067406	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	28.212841	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	33.024471	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	32.220509	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	33.487503	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	39.53178	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	35.605385	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	37.596611	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	58.239876	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	56.674763	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	59.844738	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	62.025043	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	57.424515	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	45.830723	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	40.970337	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	46.634163	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	56.860832	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	49.441105	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	44.166576	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	44.078342	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	45.139263	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	66.226807	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	64.080704	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	62.207836	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	59.330833	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	51.815681	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	48.189621	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	43.409107	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	45.698421	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	43.426426		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	45.98613		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	53.448071		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	111.273148		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	76.342316		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	112.226974		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	98.167068		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	74.984329		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	88.951378		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	40.745018	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	36.120716	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	28.982143	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	62.336475	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	75.382645	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	81.874268	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	80.163635	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	58.875122	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	66.727226	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	73.174805	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	66.239632	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	59.489498	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg13473, jg18303, jg4632, jg7965
Aizoaceae	Mesembryanthemum crystallinum	2	gene_13269, gene_21445
Amaranthaceae	Atriplex hortensis	2	Ah009210, Ah034825
Amaranthaceae	Beta vulgaris	2	BVRB_2g031260, BVRB_9g223140
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg11688, Sbi_jg21071, Sbi_jg22730
Amaranthaceae	Salicornia europaea	2	Seu_jg16605, Seu_jg20936
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00005086, GOSA_00018282
Amaranthaceae	Suaeda glauca	6	Sgl60622, Sgl62400, Sgl66949, Sgl70922, Sgl72218, Sgl74496
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000016566, gene:ENSEOMG00000017326 ... gene:ENSEOMG00000019234, gene:ENSEOMG00000037244, gene:ENSEOMG00000050925, gene:ENSEOMG00000052684
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1BG0021910, CQ.Regalona.r1.2AG0023710 ... CQ.Regalona.r1.7BG0000080, CQ.Regalona.r1.9AG0024340
Anacardiaceae	Pistacia vera	1	pistato.v30250800
Apiaceae	Apium graveolens	3	Ag3G01362, Ag7G01895, Ag9G01193
Arecaceae	Cocos nucifera	4	COCNU_01G005280, COCNU_08G003950, contig69218186G000010 ... scaffold015856G000020
Arecaceae	Phoenix dactylifera	3	gene-LOC103710413, gene-LOC103712200, gene-LOC103714228
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.3364.V1.1, AsparagusV1_05.3469.V1.1
Asteraceae	Flaveria trinervia	3	Ftri16G00648, Ftri18G24347, Ftri2G23221
Brassicaceae	Arabidopsis thaliana	4	AT1G15920.2, AT1G80780.3, AT2G32070.1, AT5G10960.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10014350m.g.v1.0, Thhalv10017059m.g.v1.0 ... Thhalv10018990m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp4g14480.v2.2, Sp5g34960.v2.2, Sp6g32530.v2.2
Brassicaceae	Brassica nigra	4	BniB02g051040.2N, BniB05g075340.2N, BniB06g068170.2N ... BniB08g004440.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq02G0400
Casuarinaceae	Casuarina glauca	2	Cgl02G0426, Cgl03G2676
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g06320, gene.Cymno02g05250
Dunaliellaceae	Dunaliella salina	1	Dusal.0690s00005.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate04g29420, gene.Thate05g06260, gene.Thate07g07720
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-315, nbisL1-mrna-3304, nbisL1-mrna-8152
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.806, evm.TU.LG07.1513, evm.TU.LG07.247
Plantaginaceae	Plantago ovata	2	Pov_00004795, Pov_00034471
Plumbaginaceae	Limonium bicolor	1	Lb2G12463
Poaceae	Echinochloa crus-galli	6	AH03.1926, AH07.3782, AH08.1683, BH08.1739, CH03.2263 ... CH08.1883
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0148960, gene-QOZ80_2BG0205250 ... gene-QOZ80_6AG0535240, gene-QOZ80_6BG0488480, gene-QOZ80_8AG0632220, gene-QOZ80_8BG0661210
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.5HG0484150.1.CDS1 ... HORVU.MOREX.r3.6HG0624290.1.CDS1, HORVU.MOREX.r3.7HG0696100.1
Poaceae	Lolium multiflorum	5	gene-QYE76_005114, gene-QYE76_005196, gene-QYE76_026003 ... gene-QYE76_026004, gene-QYE76_031366
Poaceae	Oryza coarctata	5	Oco03G024250, Oco15G009350, Oco16G008770, Oco17G004900 ... Oco18G004940
Poaceae	Oryza sativa	3	LOC_Os02g55300.1, LOC_Os08g34170.1, LOC_Os09g24990.2
Poaceae	Paspalum vaginatum	3	gene-BS78_02G183400, gene-BS78_04G306100 ... gene-BS78_07G149100
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0206282, Pt_Chr0702185
Poaceae	Sporobolus alterniflorus	8	Chr09G017700, Chr10G009960, Chr13G001880, Chr14G014010 ... Chr16G015070, Chr17G014530, Chr18G007640, Chr21G013070
Poaceae	Thinopyrum elongatum	3	Tel5E01G369500, Tel6E01G637400, Tel7E01G510200
Poaceae	Triticum dicoccoides	6	gene_TRIDC5AG036120, gene_TRIDC5BG038010 ... gene_TRIDC6AG053740, gene_TRIDC6BG062640, gene_TRIDC7AG041200, gene_TRIDC7BG032350
Poaceae	Triticum aestivum	3	TraesCS6A02G358700.1.cds1, TraesCS6B02G391400.1.cds1 ... TraesCS6D02G341500.1.cds1
Poaceae	Zea mays	5	Zm00001eb041180_P001, Zm00001eb179830_P001 ... Zm00001eb192370_P001, Zm00001eb257850_P001, Zm00001eb312820_P001
Poaceae	Zoysia japonica	4	nbis-gene-17057, nbis-gene-20044, nbis-gene-30820 ... nbis-gene-8428
Poaceae	Zoysia macrostachya	5	Zma_g14623, Zma_g17329, Zma_g24128, Zma_g30322, Zma_g32412
Portulacaceae	Portulaca oleracea	3	evm.TU.LG05.1545, evm.TU.LG07.1215, evm.TU.LG08.998
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g24120, gene.Posoc03g12630
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_11_RagTag.620, evm.TU.Scaffold_11_RagTag.622 ... evm.TU.Scaffold_18_RagTag.247
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-28335, nbisL1-mrna-6702
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1686, nbisL1-mrna-20937, nbisL1-mrna-2575
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-12254, nbisL1-mrna-12255, nbisL1-mrna-7748 ... nbisL1-mrna-7749
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000005l.24, add.evm.TU.utg000005l.25 ... add.evm.TU.utg000022l.105, add.evm.TU.utg000023l.123, add.evm.TU.utg000023l.124
Rhizophoraceae	Kandelia obovata	3	Maker00008639, Maker00018718, Maker00018765
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-17130, nbisL1-mrna-17131, nbisL1-mrna-22427 ... nbisL1-mrna-22428
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-20688, nbisL1-mrna-21515, nbisL1-mrna-21517
Salicaceae	Populus euphratica	4	populus_peu04092, populus_peu12249, populus_peu12987 ... populus_peu34924
Solanaceae	Lycium barbarum	4	gene-LOC132598921, gene-LOC132606205, gene-LOC132633028 ... gene-LOC132633030
Solanaceae	Solanum chilense	3	SOLCI002190200, SOLCI003338800, SOLCI003774000
Solanaceae	Solanum pennellii	3	gene-LOC107004739, gene-LOC107012132, gene-LOC107023281
Tamaricaceae	Reaumuria soongarica	2	STRG.12375_chr02_-, STRG.1238_chr01_+
Tamaricaceae	Tamarix chinensis	3	TC01G0995, TC10G1047, TC10G2405
Zosteraceae	Zostera marina	2	Zosma03g06320.v3.1, Zosma06g16020.v3.1