Basic Information
Locus ID:
Ag7G01884
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 225397099 | 225401171 | - | Ag7G01884 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 17,727.26 Da | 48.25 | 79.62 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 148 | 4.32914E-53 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 7 | 147 | 1.2E-45 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 4 | 153 | 2.75E-50 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 152 | 9.8E-52 | IPR016135 |
| SMART | SM00212 | ubc_7 | 6 | 153 | 4.7E-50 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 3 | 153 | 50.61013 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 78 | 94 | - | IPR023313 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25760.1 | peroxin4. mutant displays sucrose-dependent seedling development and reduced lateral root production. PEX4 interacts with PEX22 in a yeast two-hybrid. Necessary for peroxisome biogenesis. The PEX4 and PEX22 pair may be important during the remodeling of peroxisome matrix contents as glyoxysomes transition to leaf peroxisomes. | 0 |
| RefSeq | XP_017232382.1 | PREDICTED: protein PEROXIN-4 isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q8LGF7 | Protein PEROXIN-4 OS=Arabidopsis thaliana OX=3702 GN=PEX4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G2YI38 | protein PEROXIN-4 isoform X2 OS=Capsicum annuum OX=4072 GN=LOC107848349 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 55.544678 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 46.448948 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 44.467487 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 46.1049 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 43.274841 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 46.709118 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 35.389164 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 32.431377 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 64.671257 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 60.077427 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 62.535858 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 59.031227 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 55.53083 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 62.38892 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 87.82888 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 84.377747 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 104.639137 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 83.884903 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 73.796494 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 84.541946 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 77.158417 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 133.320648 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 135.280899 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 145.34346 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 124.756439 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 75.938225 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 93.491394 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 74.911476 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 80.301529 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 73.583138 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 80.961693 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 76.577728 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 98.301666 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 85.917389 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 83.611412 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 103.055923 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 138.99205 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 132.647003 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 50.113411 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 31.515894 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 36.601074 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 71.908073 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 70.515533 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 101.720734 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 86.877281 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 79.767815 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 83.440971 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 87.906685 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 78.067627 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 70.129005 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23863, jg36729 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22378 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016873 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12552, Sbi_jg53391 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8540 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011497 |
| Amaranthaceae | Suaeda glauca | 23 | Sgl00770, Sgl05775, Sgl13219, Sgl18434, Sgl31635, Sgl32010 ... |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000008838, gene:ENSEOMG00000046620 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0007690, CQ.Regalona.r1.8AG0007700 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30253550 |
| Apiaceae | Apium graveolens | 1 | Ag7G01884 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696073 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.442.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G29976 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G25760.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005728m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g21860.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g078160.2N, BniB07g039660.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G2285 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G2483, Cgl07G2488 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g12100 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0341s00014.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g25260 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.787 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025884 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G05240, Lb1G05243 |
| Poaceae | Echinochloa crus-galli | 4 | BH05.638, BH07.2548, CH05.738, CH07.2607 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0401030 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0504760.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_007120, gene-QYE76_023880 |
| Poaceae | Oryza coarctata | 2 | Oco03G016110, Oco04G016820 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g42314.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G205200 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0204082, Pt_Chr0700938, Pt_Chr0700941 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G011000, Chr12G025930, Chr22G012500 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G571800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG052270, gene_TRIDC5BG056570 |
| Poaceae | Triticum aestivum | 2 | TraesCS5A02G357500.1, TraesCS5B02G360000.1 |
| Poaceae | Zea mays | 4 | Zm00001eb185480_P001, Zm00001eb185530_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-17930 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27882 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.959, evm.TU.LG20.917 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g22580 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1187 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-27365 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20660 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.752 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001291 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9721 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1008 |
| Salicaceae | Populus euphratica | 2 | populus_peu04885, populus_peu12771 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600337 |
| Solanaceae | Solanum chilense | 1 | SOLCI004965100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002980 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17226 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G0362 |
| Zosteraceae | Zostera marina | 1 | Zosma05g13540.v3.1 |