Basic Information
Locus ID:
Ag7G01874
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Mitogen-activated protein kinase kinase kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 223655280 | 223655996 | + | Ag7G01874 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 26,933.61 Da | 71.82 | 80.38 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04434 | SWIM zinc finger | 58 | 86 | 2.1E-5 | IPR007527 |
| Pfam | PF13639 | Ring finger domain | 160 | 206 | 5.5E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 150 | 213 | 1.85E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 143 | 223 | 2.8E-9 | IPR013083 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 58 | 88 | 10.521502 | IPR007527 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 160 | 206 | 10.114045 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G11620.1 | SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related. | 0 |
| RefSeq | XP_017229934.1 | PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166HW74 | SWIM-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003123 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 6.625463 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 7.582665 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 7.350286 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 2.786393 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 5.977813 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 5.643518 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.416279 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.962687 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.758652 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.342563 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.815876 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.128329 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.057551 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.820693 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.133754 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.63283 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.124168 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 9.369744 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.084666 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.887826 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.905411 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.105432 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.168861 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.083396 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.454561 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.900857 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.450501 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.716895 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.134691 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.601679 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.754548 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.201773 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.480387 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.530542 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.082462 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.7111 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.231519 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 14.370983 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.179496 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg36709 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13222 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah000302, Ah000305, Ah034994 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g032410, BVRB_5g120090 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12887, Sbi_jg31604, Sbi_jg52982, Sbi_jg57666 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg25341, Seu_jg8874 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00018191, GOSA_00025841 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl54276, Sgl59615, Sgl62263, Sgl66811 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000018509 |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2AG0015480, CQ.Regalona.r1.2BG0017510 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30253840 |
| Apiaceae | Apium graveolens | 1 | Ag7G01874 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G000770, COCNU_03G014340 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710286, gene-LOC103710977 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G18422, Ftri2G13153 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G11620.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014372m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g32000.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g050380.2N, BniB05g025940.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g02680 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0548s00003.v1.0, Dusal.0681s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g16280 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.817 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013615 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.1984, BH06.1822, CH06.2004 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0542690, gene-QOZ80_6BG0495890 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0718460.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_034403 |
| Poaceae | Oryza coarctata | 2 | Oco11G010950, Oco12G011060 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g36030.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G163300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0400321 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G016250, Chr11G006150 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G628300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG049680, gene_TRIDC7BG044160 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G355600.1.cds1, TraesCS7B02G272100.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb277580_P001, Zm00001eb384710_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-10242, nbis-gene-41214, nbis-gene-58738 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30689, Zma_g32930 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.699, evm.TU.LG15.237, evm.TU.LG19.742 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g06870 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.765, evm.TU.Scaffold_4_RagTag.1172 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13726, nbisL1-mrna-27378 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20666, nbisL1-mrna-2832 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1285 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000033l.169 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18271, nbisL1-mrna-20628 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1018, nbisL1-mrna-7961 |
| Salicaceae | Populus euphratica | 1 | populus_peu12741 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599423 |
| Solanaceae | Solanum chilense | 2 | SOLCI003705000, SOLCI006489900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107004179, gene-LOC107028065 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3132 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1760 |
| Zosteraceae | Zostera marina | 1 | Zosma05g02490.v3.1 |