halophFGD

Basic Information

Locus ID: Ag7G01865

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Leucine-rich repeat receptor-like protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	222674399	222676988	-	Ag7G01865

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.58	70,364.00 Da	30.44	96.78	-0.07

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08263	Leucine rich repeat N-terminal domain	18	53	8.5E-7	IPR013210
Pfam	PF00069	Protein kinase domain	327	594	3.0E-28	IPR000719
Pfam	PF12799	Leucine Rich repeats (2 copies)	81	115	1.1E-6	IPR025875
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	328	598	1.14E-49	IPR011009
SUPERFAMILY	SSF52058	L domain-like	39	214	8.08E-32	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	95	220	6.5E-31	IPR032675
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	324	403	5.4E-9	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	404	619	9.2E-42	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	14	94	4.6E-13	IPR032675
ProSiteProfiles	PS50011	Protein kinase domain profile.	324	603	28.908989	IPR000719
MobiDBLite	mobidb-lite	consensus disorder prediction	609	631	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	610	631	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G68400.1	leucine-rich repeat transmembrane protein kinase family protein.
RefSeq	XP_017229007.1	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Daucus carota subsp. sativus]
Swiss-Prot	Q9M9C5	Probable leucine-rich repeat receptor-like protein kinase At1g68400 OS=Arabidopsis thaliana OX=3702 GN=At1g68400 PE=1 SV=1
TrEMBL	A0A5B7BYZ4	Protein kinase domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_042647 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.390463	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.168171	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.097886	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	3.020034	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.454619	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.590126	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.51845	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.118907	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	11.096962	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	11.64457	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	11.917315	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	6.69205	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	8.879796	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	11.523577	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.590105	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.185358	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.176215	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	2.721862	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	4.343053	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	2.83774	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.432472	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.262291	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.779497	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.391922	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.502637	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.190051	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	2.521065	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.65657	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	18.375093		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	27.685751		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	21.542095		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	12.618662		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	4.516801		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	15.543004		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	8.236664		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	17.456783		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	12.163592		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	48.182781	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	96.027649	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	52.001228	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	2.238216	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.119496	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.350125	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.787647	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.391838	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	2.130191	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.022471	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	2.542375	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	1	Ag7G01865
Arecaceae	Cocos nucifera	1	COCNU_06G001680
Arecaceae	Phoenix dactylifera	1	gene-LOC103712875
Asparagaceae	Asparagus officinalis	1	AsparagusV1_08.466.V1.1
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.885, evm.TU.LG07.911
Poaceae	Echinochloa crus-galli	3	AH02.2938, BH02.3022, CH02.3505
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_1AG0030780, gene-QOZ80_1BG0080730
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0284310.1
Poaceae	Lolium multiflorum	1	gene-QYE76_054866
Poaceae	Oryza coarctata	2	Oco01G018590, Oco02G018910
Poaceae	Oryza sativa	2	LOC_Os01g51400.1, LOC_Os02g16790.1
Poaceae	Paspalum vaginatum	1	gene-BS78_03G252900
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0602932
Poaceae	Sporobolus alterniflorus	2	Chr03G014760, Chr08G014820
Poaceae	Thinopyrum elongatum	1	Tel3E01G421700
Poaceae	Triticum dicoccoides	2	gene_TRIDC3AG037470, gene_TRIDC3BG041890
Poaceae	Triticum aestivum	3	TraesCS3A02G250300.1, TraesCS3B02G279800.1 ... TraesCS3D02G250700.1
Poaceae	Zea mays	1	Zm00001eb361320_P001
Poaceae	Zoysia japonica	1	nbis-gene-12723
Poaceae	Zoysia macrostachya	1	Zma_g8520
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_10_RagTag.711
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-8875
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-8960
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000033l.497
Rhizophoraceae	Kandelia obovata	1	Maker00014661
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-3889
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-8007
Salicaceae	Populus euphratica	2	populus_peu05046, populus_peu12649
Solanaceae	Lycium barbarum	1	gene-LOC132600362
Solanaceae	Solanum chilense	1	SOLCI000709700
Solanaceae	Solanum pennellii	1	gene-LOC107003077