Basic Information
Locus ID:
Ag7G01771
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 211101607 | 211110775 | - | Ag7G01771 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 40,347.32 Da | 61.62 | 65.00 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16521 | RING-HC_MKRN | 207 | 265 | 2.89702E-17 | - |
| Pfam | PF18044 | CCCH-type zinc finger | 34 | 53 | 2.7E-7 | IPR041367 |
| Pfam | PF14608 | RNA-binding, Nab2-type zinc finger | 7 | 25 | 0.015 | - |
| Pfam | PF14608 | RNA-binding, Nab2-type zinc finger | 299 | 321 | 0.0027 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 207 | 264 | 4.5E-6 | IPR018957 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 32 | 53 | 2.88E-5 | IPR036855 |
| SUPERFAMILY | SSF57850 | RING/U-box | 195 | 271 | 5.05E-13 | - |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 3 | 26 | 1.7E-7 | IPR036855 |
| Gene3D | G3DSA:4.10.1000.10 | - | 32 | 68 | 4.4E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 175 | 271 | 1.1E-9 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1350 | - | 1 | 31 | 2.0E-6 | - |
| SMART | SM00356 | c3hfinal6 | 139 | 164 | 0.0067 | IPR000571 |
| SMART | SM00184 | ring_2 | 207 | 264 | 2.3E-6 | IPR001841 |
| SMART | SM00356 | c3hfinal6 | 1 | 27 | 3.9E-5 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 31 | 55 | 5.8E-4 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 294 | 322 | 0.085 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 29 | 56 | 14.248524 | IPR000571 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 207 | 265 | 12.194218 | IPR001841 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 138 | 165 | 12.483374 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 294 | 323 | 13.24389 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 1 | 28 | 14.858815 | IPR000571 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 231 | 240 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08505.1 | zinc finger (CCCH-type/C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_017230622.1 | PREDICTED: zinc finger CCCH domain-containing protein 69-like [Daucus carota subsp. sativus] | 0 |
| E0X9N4 | Putative RING-type E3 ubiquitin transferase C3H69 OS=Arabidopsis thaliana OX=3702 GN=At3g63550 PE=3 SV=1 | 0 | |
| TrEMBL | A0A166HYQ8 | RING-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003208 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 14.990716 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 12.143701 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 15.195932 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 15.778741 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 15.372254 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 11.50703 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 14.232003 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 14.006839 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 12.619747 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 17.897945 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 16.273413 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 26.218313 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 20.796394 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 17.048185 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 13.621395 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.5209 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 12.695833 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.435844 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.495909 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 11.050022 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 12.64155 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.486271 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 14.987233 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 13.220704 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.972104 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 11.013983 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 12.031255 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.91183 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.848737 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.136871 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.628765 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.673609 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.921201 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.573571 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.386434 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.695163 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.481554 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.69751 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.601456 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.796308 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.768015 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 25.797571 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 26.481077 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 22.194357 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 25.671721 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 26.157383 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 27.664913 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 18.073027 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 23.817503 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 21.385626 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1628, jg29820 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13397 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035726 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g029470 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21782, Sbi_jg22039 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15966 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008583 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl62982, Sgl63081, Sgl67689 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018042, gene:ENSEOMG00000019258 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0016770, CQ.Regalona.r1.2BG0018570 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30230530 |
| Apiaceae | Apium graveolens | 2 | Ag7G01771, Ag9G00830 |
| Arecaceae | Cocos nucifera | 2 | COCNU_12G005470, scaffold021807G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720335 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1290.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G13672 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G08505.2 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10010518m.g.v1.0, Thhalv10021103m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g00020.v2.2, Sp3g06990.v2.2, Sp5g00030.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g019970.2N, BniB03g023650.2N, BniB07g058690.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0516 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g09350 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0088s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g08180 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2530 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.46 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00016834, Pov_00024847, Pov_00030975 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G09743, Lb4G22821 |
| Poaceae | Echinochloa crus-galli | 4 | AH06.1311, AH07.3237, CH06.1489, CH07.3142 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0519080, gene-QOZ80_6BG0471160 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0609850.2, HORVU.MOREX.r3.7HG0675280.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_029576 |
| Poaceae | Oryza coarctata | 2 | Oco11G008220, Oco12G008240 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g21390.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G256400, gene-BS78_10G132200 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0203517, Pt_Chr0203546, Pt_Chr0404303, Pt_Chr0404320 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G001720, Chr11G016850, Chr15G005000, Chr21G005790 |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G515300, Tel7E01G409900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG043080, gene_TRIDC6BG050500 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G282000.2, TraesCS6B02G310500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb252860_P001, Zm00001eb381600_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28951 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29599 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG12.408, evm.TU.LG16.1562, evm.TU.LG26.104 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g23150 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.331, evm.TU.Scaffold_8_RagTag.1392 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9189 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11425, nbisL1-mrna-7475 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15263, nbisL1-mrna-6963 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000018l.192, evm.TU.utg000028l.210 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003493, Maker00010415 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-8824, nbisL1-mrna-9535 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18762, nbisL1-mrna-20148 |
| Salicaceae | Populus euphratica | 2 | populus_peu01850, populus_peu35965 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132636195, gene-LOC132644584 |
| Solanaceae | Solanum chilense | 2 | SOLCI004155700, SOLCI005562700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008594, gene-LOC107032003 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.2003_chr01_-, gene_12705 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0021, TC05G1267 |
| Zosteraceae | Zostera marina | 2 | Zosma01g03960.v3.1, Zosma06g16300.v3.1 |