halophFGD

Basic Information

Locus ID: Ag7G01712

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: F-Box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	205656336	205664476	-	Ag7G01712

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.66	150,318.05 Da	49.76	82.21	-0.35

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd18793	SF2_C_SNF	1154	1262	7.31454E-28	-
CDD	cd18008	DEXDc_SHPRH-like	718	898	1.99481E-49	-
Pfam	PF00646	F-box domain	240	274	2.5E-5	IPR001810
Pfam	PF07496	CW-type Zinc Finger	544	587	8.2E-14	IPR011124
Pfam	PF00271	Helicase conserved C-terminal domain	1155	1252	1.1E-9	IPR001650
Pfam	PF00176	SNF2 family N-terminal domain	286	940	9.4E-94	IPR000330
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	271	364	1.09E-7	IPR027417
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	799	1278	1.1E-33	IPR027417
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	724	885	1.2E-21	IPR027417
SUPERFAMILY	SSF81383	F-box domain	230	274	4.06E-7	IPR036047
Gene3D	G3DSA:3.40.50.10810	-	711	901	3.0E-23	IPR038718
Gene3D	G3DSA:3.30.40.100	-	536	593	5.6E-16	-
Gene3D	G3DSA:3.40.50.300	-	1056	1315	2.3E-29	IPR027417
SMART	SM00256	fbox_2	241	281	7.0E-4	IPR001810
SMART	SM00487	ultradead3	279	871	2.6E-9	IPR014001
SMART	SM00490	helicmild6	1170	1252	6.0E-7	IPR001650
ProSiteProfiles	PS51194	Superfamilies 1 and 2 helicase C-terminal domain profile.	1134	1290	10.618476	IPR001650
ProSiteProfiles	PS51192	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	726	857	10.810879	IPR014001
ProSiteProfiles	PS51050	Zinc finger CW-type profile.	539	590	13.381894	IPR011124
ProSitePatterns	PS00518	Zinc finger RING-type signature.	1035	1044	-	IPR017907
MobiDBLite	mobidb-lite	consensus disorder prediction	486	513	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding) GO:0005524 (ATP binding) GO:0008270 (zinc ion binding) GO:0140658 (ATP-dependent chromatin remodeler activity)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G54460.1	SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein.
RefSeq	XP_017229517.1	PREDICTED: F-box protein At3g54460 [Daucus carota subsp. sativus]
Swiss-Prot	Q9M1I1	F-box protein At3g54460 OS=Arabidopsis thaliana OX=3702 GN=At3g54460 PE=2 SV=1
TrEMBL	A0A166HZS5	SNF2 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003247 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	15.823008	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	11.800921	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	9.938753	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	11.610571	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	10.613943	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	10.923568	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	11.817356	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	11.733525	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	24.414469	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	26.638741	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	24.996069	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	27.468082	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	26.189085	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	21.669842	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	5.887657	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	6.946041	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	5.515181	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	8.17109	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	6.698883	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	7.670747	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	8.957504	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	7.61733	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	6.889994	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	7.283012	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	7.027512	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	12.763941	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	8.717815	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	7.204114	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	8.820968	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	2.400801		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	3.414557		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.477563		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	5.867054		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	5.388149		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	6.230238		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	2.70725		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.627221		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.975305		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	11.784321	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	6.824066	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	5.088522	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	7.542972	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	8.876722	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	8.010492	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	7.135561	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	6.698929	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	9.287	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	9.915755	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	9.549797	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	9.439955	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg1541
Aizoaceae	Mesembryanthemum crystallinum	1	gene_17169
Amaranthaceae	Atriplex hortensis	1	Ah032391
Amaranthaceae	Beta vulgaris	1	BVRB_2g041480
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg29962, Sbi_jg43425
Amaranthaceae	Salicornia europaea	1	Seu_jg18477
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00004235
Amaranthaceae	Suaeda glauca	2	Sgl66254, Sgl70570
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000014745, gene:ENSEOMG00000020728 ... gene:ENSEOMG00000048691
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.2AG0004420, CQ.Regalona.r1.2BG0005620
Anacardiaceae	Pistacia vera	1	pistato.v30165940
Apiaceae	Apium graveolens	3	Ag11G04173, Ag7G01712, Ag8G01535
Arecaceae	Cocos nucifera	1	COCNU_16G002180
Arecaceae	Phoenix dactylifera	1	gene-LOC103701638
Asteraceae	Flaveria trinervia	1	Ftri11G08566
Brassicaceae	Arabidopsis thaliana	1	AT3G54460.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10010067m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g07960.v2.2
Brassicaceae	Brassica nigra	1	BniB06g065390.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq05G0876
Casuarinaceae	Casuarina glauca	1	Cgl05G0889
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno05g09600
Dunaliellaceae	Dunaliella salina	2	Dusal.0022s00035.v1.0, Dusal.0193s00008.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate06g17190
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG02.1984
Plantaginaceae	Plantago ovata	1	Pov_00014812
Plumbaginaceae	Limonium bicolor	1	Lb1G02355
Poaceae	Echinochloa crus-galli	3	AH02.4531, BH02.4584, CH02.4635
Poaceae	Eleusine coracana subsp. coracana	1	gene-QOZ80_1AG0046780
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0320710.1
Poaceae	Lolium multiflorum	1	gene-QYE76_058087
Poaceae	Oryza coarctata	2	Oco01G030060, Oco02G031210
Poaceae	Paspalum vaginatum	1	gene-BS78_03G403500
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0403035
Poaceae	Sporobolus alterniflorus	2	Chr02G000930, Chr05G033740
Poaceae	Thinopyrum elongatum	1	Tel3E01G794500
Poaceae	Triticum dicoccoides	2	gene_TRIDC3AG069780, gene_TRIDC3BG078800
Poaceae	Triticum aestivum	2	TraesCS3B02G543900.1, TraesCS3D02G490000.1
Poaceae	Zea mays	2	Zm00001eb140810_P001, Zm00001eb140820_P001
Poaceae	Zoysia japonica	1	nbis-gene-10822
Poaceae	Zoysia macrostachya	1	Zma_g9386
Portulacaceae	Portulaca oleracea	3	evm.TU.LG10.383, evm.TU.LG17.379, evm.TU.LG25.65
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g21150
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_11_RagTag.57
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-7154
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-13637
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-14504, nbisL1-mrna-14505
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000005l.345
Rhizophoraceae	Kandelia obovata	1	Maker00010191
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-243
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-22075
Salicaceae	Populus euphratica	1	populus_peu35074
Solanaceae	Lycium barbarum	1	gene-LOC132615369
Solanaceae	Solanum chilense	1	SOLCI001589500
Solanaceae	Solanum pennellii	1	gene-LOC107004568
Tamaricaceae	Reaumuria soongarica	1	gene_14390
Tamaricaceae	Tamarix chinensis	1	TC01G3892
Zosteraceae	Zostera marina	1	Zosma02g16880.v3.1