halophFGD

Basic Information

Locus ID: Ag7G01705

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: hydroxyproline O-arabinosyltransferase activity

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	205302271	205307561	-	Ag7G01705

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.61	45,704.64 Da	46.74	84.17	-0.27

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
ProSiteProfiles	PS51257	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	22	6.0	-

KEGG Pathway

KO Term:

K20782 (hydroxyproline O-arabinosyltransferase [EC:2.4.2.58])

Pathway:

ko00514 (Other types of O-glycan biosynthesis) map00514 (Other types of O-glycan biosynthesis)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G13500.1
RefSeq	XP_017228262.1	PREDICTED: uncharacterized protein LOC108192413 isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	G7LG31	Hydroxyproline O-arabinosyltransferase RDN2 OS=Medicago truncatula OX=3880 GN=RDN2 PE=3 SV=1
TrEMBL	A0A162ALF9	Hydroxyproline O-arabinosyltransferase 3-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000414 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	18.366776	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	15.340315	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	11.161268	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	12.436721	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	11.943211	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	9.07806	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	8.35838	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	7.85737	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	14.009871	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	13.495349	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	14.613946	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	13.266186	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	11.035774	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	8.851016	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	5.62794	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	4.856584	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	6.613219	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	3.11591	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	2.52756	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	5.687903	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	4.742309	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	11.568606	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	12.110137	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	11.732477	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	9.409772	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	7.669973	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	4.837918	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	3.873079	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	5.864007	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	5.641294		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	6.104667		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	3.803907		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	9.341405		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	12.151553		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	11.803969		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	5.9909		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	5.017115		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	4.601637		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	5.573085	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	3.943396	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	3.2065	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	11.885086	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	7.526432	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	4.661209	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	5.412302	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	8.001526	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	5.225767	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	13.879866	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	26.921574	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	22.082331	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg1537, jg29894, jg35605, jg36566, jg4630, jg8523
Aizoaceae	Mesembryanthemum crystallinum	4	gene_17153, gene_17905, gene_9966, gene_9967
Amaranthaceae	Atriplex hortensis	5	Ah005072, Ah005073, Ah032343, Ah034803, Ah038287
Amaranthaceae	Beta vulgaris	4	BVRB_2g030960, BVRB_2g041690, BVRB_4g073690, BVRB_4g073700
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg17784, Sbi_jg21109, Sbi_jg22695, Sbi_jg30012 ... Sbi_jg43450, Sbi_jg62444
Amaranthaceae	Salicornia europaea	3	Seu_jg1018, Seu_jg16571, Seu_jg18450
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00004219, GOSA_00007208, GOSA_00018306
Amaranthaceae	Suaeda glauca	6	Sgl59148, Sgl59149, Sgl62374, Sgl66233, Sgl66911, Sgl70551
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000013319, gene:ENSEOMG00000017584 ... gene:ENSEOMG00000020257, gene:ENSEOMG00000020355, gene:ENSEOMG00000029773, gene:ENSEOMG00000042139, gene:ENSEOMG00000050145, gene:ENSEOMG00000051874
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.1BG0021720, CQ.Regalona.r1.2AG0004190 ... CQ.Regalona.r1.2AG0023450, CQ.Regalona.r1.2BG0005470, CQ.Regalona.r1.4AG0002210
Anacardiaceae	Pistacia vera	3	pistato.v30038820, pistato.v30050700, pistato.v30250560
Apiaceae	Apium graveolens	4	Ag11G04405, Ag7G01349, Ag7G01705, Ag9G01468
Arecaceae	Cocos nucifera	4	COCNU_02G017910, COCNU_04G006760, COCNU_12G004520 ... COCNU_16G002030
Arecaceae	Phoenix dactylifera	4	gene-LOC103701651, gene-LOC103705083, gene-LOC103716922 ... gene-LOC103719210
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.2504.V1.1, AsparagusV1_07.1688.V1.1 ... AsparagusV1_08.815.V1.1
Asteraceae	Flaveria trinervia	3	Ftri15G31300, Ftri16G19837, Ftri18G14732
Brassicaceae	Arabidopsis thaliana	3	AT2G25260.1, AT5G13500.1, AT5G25265.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10000212m.g.v1.0, Thhalv10004426m.g.v1.0 ... Thhalv10013935m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g22280.v2.2, Sp4g04380.v2.2, Sp6g30520.v2.2
Brassicaceae	Brassica nigra	6	BniB01g018020.2N, BniB02g049040.2N, BniB04g003850.2N ... BniB05g024840.2N, BniB07g039850.2N, BniB08g006360.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq04G2400, Ceq04G2402, Ceq05G0896, Ceq05G1620
Casuarinaceae	Casuarina glauca	5	Cgl04G2601, Cgl04G2606, Cgl04G2607, Cgl05G0908, Cgl05G1615
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno02g05430, gene.Cymno05g01840, gene.Cymno06g08030 ... gene.Cymno08g05450
Dunaliellaceae	Dunaliella salina	1	Dusal.0438s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate01g12710, gene.Thate01g26000, gene.Thate02g08060 ... gene.Thate07g07870
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG02.2004, evm.TU.LG07.1492, evm.TU.LG09.131
Plantaginaceae	Plantago ovata	3	Pov_00004805, Pov_00024396, Pov_00039380
Plumbaginaceae	Limonium bicolor	6	Lb0G36730, Lb1G02367, Lb2G12888, Lb2G12946, Lb7G35164 ... Lb7G35168
Poaceae	Echinochloa crus-galli	12	AH05.2640, AH06.534, AH07.3301, BH05.1185, BH05.2727 ... BH06.578, BH07.3119, CH01.2671, CH01.4786, CH05.1525, CH06.593, CH07.3189
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0004110, gene-QOZ80_1BG0052530 ... gene-QOZ80_5AG0374990, gene-QOZ80_5BG0421250, gene-QOZ80_6AG0511060, gene-QOZ80_6BG0463130
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0058910.1, HORVU.MOREX.r3.3HG0256430.1 ... HORVU.MOREX.r3.5HG0497880.1, HORVU.MOREX.r3.7HG0658270.1
Poaceae	Lolium multiflorum	5	gene-QYE76_018368, gene-QYE76_027711, gene-QYE76_028226 ... gene-QYE76_028268, gene-QYE76_052374
Poaceae	Oryza coarctata	6	Oco01G007650, Oco02G007970, Oco09G008470, Oco10G008630 ... Oco11G003670, Oco12G003660
Poaceae	Oryza sativa	3	LOC_Os01g16600.1, LOC_Os05g32060.1, LOC_Os06g08180.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G116500, gene-BS78_09G129000 ... gene-BS78_10G063300
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0207119, Pt_Chr0505473, Pt_Chr0603774, Pt_Chr0603856
Poaceae	Sporobolus alterniflorus	7	Chr02G026970, Chr03G001270, Chr05G004680, Chr08G003870 ... Chr11G021610, Chr18G007930, Chr22G009630
Poaceae	Thinopyrum elongatum	3	Tel1E01G400100, Tel3E01G322100, Tel7E01G293300
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG036380, gene_TRIDC1BG041460 ... gene_TRIDC3AG026020, gene_TRIDC3BG029740, gene_TRIDC7AG017470, gene_TRIDC7BG006730
Poaceae	Triticum aestivum	9	TraesCS1A02G241300.1, TraesCS1B02G253100.2 ... TraesCS1D02G241200.1, TraesCS3A02G187000.1, TraesCS3B02G216400.1, TraesCS3D02G190800.1, TraesCS7A02G143900.1, TraesCS7B02G046000.1, TraesCS7D02G145400.1
Poaceae	Zea mays	3	Zm00001eb287070_P001, Zm00001eb332930_P001 ... Zm00001eb374910_P001
Poaceae	Zoysia japonica	2	nbis-gene-23691, nbis-gene-5030
Poaceae	Zoysia macrostachya	4	Zma_g28156, Zma_g29219, Zma_g7343, Zma_g9675
Portulacaceae	Portulaca oleracea	8	evm.TU.LG10.396, evm.TU.LG17.393, evm.TU.LG18.1690 ... evm.TU.LG19.1003, evm.TU.LG19.1005, evm.TU.LG20.194, evm.TU.LG24.1010, evm.TU.LG24.1012
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g04030, gene.Posoc02g23860, gene.Posoc03g12120 ... gene.Posoc05g13690
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.876, evm.TU.Scaffold_11_RagTag.73 ... evm.TU.Scaffold_13_RagTag.987
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-13599, nbisL1-mrna-7168
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-12484, nbisL1-mrna-17179, nbisL1-mrna-4876
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-14495, nbisL1-mrna-16350, nbisL1-mrna-9127
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000005l.139, evm.TU.utg000004l.192
Rhizophoraceae	Kandelia obovata	2	Maker00003935, Maker00015504
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-255, nbisL1-mrna-3753, nbisL1-mrna-4494
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-20807, nbisL1-mrna-22063, nbisL1-mrna-7835
Salicaceae	Populus euphratica	6	populus_peu01786, populus_peu04723, populus_peu12954 ... populus_peu35056, populus_peu36032, populus_peu37280
Solanaceae	Lycium barbarum	3	gene-LOC132600474, gene-LOC132636155, gene-LOC132643650
Solanaceae	Solanum chilense	2	SOLCI006039000, SOLCI006236600
Solanaceae	Solanum pennellii	2	gene-LOC107003047, gene-LOC107026711
Tamaricaceae	Reaumuria soongarica	3	gene_14393, gene_7304, gene_9765
Tamaricaceae	Tamarix chinensis	2	TC01G1445, TC01G3908
Zosteraceae	Zostera marina	5	Zosma01g41290.v3.1, Zosma01g41300.v3.1, Zosma03g01870.v3.1 ... Zosma06g16050.v3.1, Zosma06g16100.v3.1