Basic Information
Locus ID:
Ag7G01704
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 205078637 | 205086786 | - | Ag7G01704 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 98,699.53 Da | 36.33 | 98.89 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08752 | Coatomer gamma subunit appendage platform subdomain | 620 | 765 | 1.4E-54 | IPR013040 |
| Pfam | PF01602 | Adaptin N terminal region | 27 | 537 | 1.6E-129 | IPR002553 |
| Pfam | PF16381 | Coatomer subunit gamma-1 C-terminal appendage platform | 768 | 882 | 6.3E-35 | IPR032154 |
| SUPERFAMILY | SSF49348 | Clathrin adaptor appendage domain | 614 | 769 | 4.66E-55 | IPR013041 |
| SUPERFAMILY | SSF55711 | Subdomain of clathrin and coatomer appendage domain | 770 | 882 | 7.85E-32 | IPR009028 |
| SUPERFAMILY | SSF48371 | ARM repeat | 27 | 558 | 7.92E-92 | IPR016024 |
| Gene3D | G3DSA:3.30.310.10 | - | 767 | 883 | 4.2E-35 | IPR012295 |
| Gene3D | G3DSA:1.25.10.10 | - | 330 | 551 | 1.0E-5 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 21 | 313 | 1.8E-106 | IPR011989 |
| Gene3D | G3DSA:2.60.40.1480 | Coatomer, gamma subunit, appendage domain | 612 | 766 | 2.1E-56 | IPR037067 |
| PIRSF | PIRSF037093 | Gamma-COP | 4 | 883 | 0.0 | IPR017106 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34450.1 | coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative. | 0 |
| RefSeq | XP_017226410.1 | PREDICTED: coatomer subunit gamma-2-like isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q0WW26 | Coatomer subunit gamma OS=Arabidopsis thaliana OX=3702 GN=At4g34450 PE=1 SV=2 | 0 | |
| TrEMBL | A0A175YD58 | Coatomer subunit gamma OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028990 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 45.200447 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 30.914427 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 26.637863 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 28.75415 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 29.099834 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 17.288563 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 18.769341 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.350993 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 65.361839 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 64.390205 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 71.931328 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 67.668449 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 63.6992 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 54.250145 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 72.848457 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 85.966095 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 68.740784 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 66.978226 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 56.54377 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 65.609108 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 53.209911 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 62.754604 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 68.101624 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 70.252914 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 60.005245 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 77.690742 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 71.010696 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 52.751938 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 74.799934 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.589678 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.41861 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.326971 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 9.521396 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 21.350306 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.59981 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 7.250411 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.588012 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.999136 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 47.406971 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 19.306839 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.854138 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 20.551697 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 15.704609 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 19.222712 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 16.966715 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 23.938871 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 26.243828 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 52.979927 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 43.838379 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 44.61993 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg1001, jg28754, jg30297 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26416 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010252 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g217580 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12456, Sbi_jg45861 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20218 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022435 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl37311, Sgl56092, Sgl61425, Sgl61660, Sgl79840, Sgl82290 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000016541, gene:ENSEOMG00000038176 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0007780, CQ.Regalona.r1.9AG0016730 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30051960, pistato.v30114190 |
| Apiaceae | Apium graveolens | 2 | Ag7G01219, Ag7G01704 |
| Arecaceae | Cocos nucifera | 2 | COCNU_14G009530, scaffold027940G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702706, gene-LOC103705392 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.680.V1.1, AsparagusV1_07.3158.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G31995, Ftri4G05415 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G34450.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10022539m.g.v1.0, Thhalv10024368m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g29400.v2.2, Sp7g32250.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g020670.2N, BniB03g063500.2N, BniB05g003840.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0089 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0105 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g14040, gene.Cymno09g06880 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0055s00019.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g32090 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.125 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007530 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G10390, Lb2G13464, Lb3G17243, Lb6G29904 |
| Poaceae | Echinochloa crus-galli | 5 | AH03.539, BH03.645, CH01.5033, CH03.735, Contig192.65 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0239910, gene-QOZ80_3BG0288120 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0044090.2, HORVU.MOREX.r3.4HG0394090.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_042094, gene-QYE76_069572 |
| Poaceae | Oryza coarctata | 4 | Oco05G007050, Oco06G007280, Oco13G003410, Oco14G003770 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g12590.1, LOC_Os07g10150.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G428000, gene-BS78_02G072000 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0101907, Pt_Chr0101934, Pt_Chr0303791 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr04G000770, Chr07G001130, Chr19G016530, Chr24G003290 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G290200, Tel4E01G403500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG024120, gene_TRIDC1BG029220 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G158700.1, TraesCS1B02G174700.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb009810_P001, Zm00001eb116280_P002 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-2369, nbis-gene-26699, nbis-gene-35552 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g1711, Zma_g4888, Zma_g6158 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.378, evm.TU.LG08.1840, evm.TU.LG09.1617 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g26390, gene.Posoc04g07650 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.2279, evm.TU.Scaffold_2_RagTag.225 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4982 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14095 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3281, nbisL1-mrna-9898 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.818, evm.TU.utg000016l.93 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005271, Maker00016237 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14742, nbisL1-mrna-4651 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1263, nbisL1-mrna-22419 |
| Salicaceae | Populus euphratica | 2 | populus_peu08884, populus_peu36465 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599161 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003036 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_16832, gene_8727 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0481, TC12G1041 |
| Zosteraceae | Zostera marina | 2 | Zosma04g03130.v3.1, Zosma06g02520.v3.1 |