Basic Information
Locus ID:
Ag7G01679
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Nuclear pore complex protein NUP160 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 202014847 | 202031735 | - | Ag7G01679 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 88,357.36 Da | 48.70 | 91.78 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G33410.1 | SUPPRESSOR OF AUXIN RESISTANCE1. | 0 |
| RefSeq | XP_017229285.1 | PREDICTED: nuclear pore complex protein NUP160 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9C811 | Nuclear pore complex protein NUP160 OS=Arabidopsis thaliana OX=3702 GN=NUP160 PE=1 SV=2 | 0 | |
| TrEMBL | A0A166I0A6 | DUF5311 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003267 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.914959 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.832391 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.197808 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.482431 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.310427 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.086864 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.932321 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.06531 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 6.557868 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 7.143127 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 6.718444 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 5.770592 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 5.417124 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 4.734668 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.927613 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.869353 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.711567 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.075592 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.526993 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.614129 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.448974 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.926004 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.597806 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.808058 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.579144 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.835678 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.0733 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.198424 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.605562 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.398684 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.417933 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.288773 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.12169 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.552608 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.022675 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.306346 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.432749 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.900841 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.949041 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.769142 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.646346 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.985691 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.25385 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.159032 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.975433 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.566424 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.856965 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.470687 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.283175 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 3.401458 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg30029 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17674 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah012470 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g146170 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42460, Sbi_jg45073 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27091 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002242 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl31817, Sgl37096 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000000281, gene:ENSEOMG00000000630 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6AG0009480 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30179420 |
| Apiaceae | Apium graveolens | 2 | Ag7G01679, Ag7G01681 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G013580 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715534 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.788.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G17728 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G33410.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006552m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g28860.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g015660.2N, BniB03g035940.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0232 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0222 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g05390 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0147s00016.v1.0, Dusal.0147s00019.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g10040 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3299 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.1097 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001838 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G11846 |
| Poaceae | Echinochloa crus-galli | 2 | BH07.460, CH03.4468 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0101430, gene-QOZ80_2BG0154770 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0557980.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_007685, gene-QYE76_020294, gene-QYE76_020295 |
| Poaceae | Oryza coarctata | 2 | Oco03G002320, Oco04G002220 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g04970.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G035900 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G035040, Chr15G026330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G247800 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG036190, gene_TRIDC6AG014820 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G112600.1, TraesCS6B02G141600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb232140_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29969, nbis-gene-29970 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14944 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1975, evm.TU.LG23.234 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g08340 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.120 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19613 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3984 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22300 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000028l.69 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010329 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8033 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22633, nbisL1-mrna-22634 |
| Salicaceae | Populus euphratica | 1 | populus_peu03813 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598547 |
| Solanaceae | Solanum chilense | 2 | SOLCI002877100, SOLCI002877200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007780 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7161 |
| Tamaricaceae | Tamarix chinensis | 11 | TC01G4040, TC02G0734, TC03G0023, TC03G0873, TC05G0362 ... |
| Zosteraceae | Zostera marina | 2 | Zosma02g06600.v3.1, Zosma469g00050.v3.1 |