Basic Information
Locus ID:
Ag7G01602
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 193412611 | 193425848 | - | Ag7G01602 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.71 | 95,869.59 Da | 46.47 | 82.72 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14270 | UBA | 12 | 41 | 1.67808E-4 | - |
| CDD | cd17920 | DEXHc_RecQ | 123 | 321 | 1.59921E-82 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 480 | 573 | 3.8E-15 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 133 | 299 | 4.4E-18 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 583 | 645 | 1.6E-8 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 169 | 585 | 2.89E-46 | IPR027417 |
| SUPERFAMILY | SSF46934 | UBA-like | 9 | 54 | 8.71E-8 | IPR009060 |
| Gene3D | G3DSA:3.40.50.300 | - | 452 | 583 | 4.6E-30 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 584 | 760 | 4.1E-21 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 87 | 322 | 3.7E-69 | IPR027417 |
| Gene3D | G3DSA:1.10.8.10 | - | 9 | 69 | 8.2E-7 | - |
| SMART | SM00487 | ultradead3 | 126 | 331 | 7.7E-30 | IPR014001 |
| SMART | SM00490 | helicmild6 | 493 | 574 | 5.7E-20 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 121 | 365 | 6.7E-67 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 138 | 314 | 23.492563 | IPR014001 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 1 | 46 | 12.450505 | IPR015940 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 454 | 627 | 15.005327 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 73 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 813 | 845 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27680.1 | RECQ helicase SIM. DNA helicase | 0 |
| RefSeq | XP_017230825.1 | PREDICTED: ATP-dependent DNA helicase Q-like SIM [Daucus carota subsp. sativus] | 0 |
| Q9FT69 | ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis thaliana OX=3702 GN=RECQSIM PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B6ZVB9 | ATP-dependent DNA helicase OS=Davidia involucrata OX=16924 GN=Din_017345 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.796681 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.170279 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.706283 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.532116 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.422851 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.640246 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.190966 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.197813 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 7.864988 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 7.253504 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 9.019344 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 11.205086 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 11.018706 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 8.926178 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.584043 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.274547 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.751793 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.64461 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.713278 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.474918 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.297282 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.812196 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.672597 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 5.457963 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.634759 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.803249 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.625245 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.268898 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.5587 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.683383 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.416725 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.991176 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.769016 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.200637 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.861247 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.883543 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.575589 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.650621 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.929034 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.058447 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.389121 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.472089 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 4.524351 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 6.098249 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.169037 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.151021 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 5.316947 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.257915 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.095936 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 9.052658 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10417 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g075670 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17119, Sbi_jg61665, Sbi_jg61673, Sbi_jg61701 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg383 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015309 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24502, Sgl29682 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000009820, gene:ENSEOMG00000042149 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0008220, CQ.Regalona.r1.4BG0008360 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30082670, pistato.v30082770 |
| Apiaceae | Apium graveolens | 1 | Ag7G01602 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G002140 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103718623, gene-LOC120107927 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_08.3142.V1.1, AsparagusV1_08.3143.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G00010 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G27680.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003644m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g20840.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g079050.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1180 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1233 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g16630 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g03780 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2463 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039255 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06671 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.995, BH05.1039, CH05.1193 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0404780, gene-QOZ80_5BG0452900 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0022490.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_009661 |
| Poaceae | Oryza coarctata | 1 | Oco10G002500 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_09G046000, gene-BS78_K087100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0501983, Pt_Chr0502104 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr18G000990, Chr22G015110 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G188300, Tel1E01G188400 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G091400.2, TraesCS1B02G119200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb354210_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18178 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27709 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1243, evm.TU.LG20.639 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g33070, gene.Posoc01g33090 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.125 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-8149 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5128 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5205 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.91 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010915 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7868 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-113 |
| Salicaceae | Populus euphratica | 1 | populus_peu13373 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645940 |
| Solanaceae | Solanum chilense | 1 | SOLCI001648600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008462 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6394 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0938 |
| Zosteraceae | Zostera marina | 1 | Zosma04g22180.v3.1 |