Basic Information
Locus ID:
Ag7G01576
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Topless-related protein 3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 190391241 | 190401333 | - | Ag7G01576 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 124,639.96 Da | 37.57 | 81.01 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 451 | 485 | 0.0027 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 914 | 947 | 0.0013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 840 | 1095 | 8.75E-39 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 347 | 660 | 9.52E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 297 | 542 | 2.1E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 962 | 1122 | 4.8E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 734 | 961 | 3.4E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 562 | 674 | 4.7E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 444 | 485 | 2.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 531 | 574 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 908 | 947 | 6.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1062 | 1094 | 53.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 865 | 905 | 4.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 831 | 862 | 380.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 577 | 617 | 0.43 | IPR001680 |
| SMART | SM00320 | WD40_4 | 487 | 528 | 0.01 | IPR001680 |
| SMART | SM00320 | WD40_4 | 394 | 438 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 338 | 377 | 0.014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 997 | 1039 | 3.9 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 9.8E-4 | IPR006594 |
| SMART | SM00668 | ctlh | 34 | 92 | 8.2E-13 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 915 | 956 | 13.449252 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 915 | 950 | 10.759232 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 451 | 486 | 9.505904 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.608736 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.017601 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 595 | 626 | 9.338814 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 472 | 486 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1108 | 1128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1095 | 1128 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_017228876.1 | PREDICTED: topless-related protein 3-like [Daucus carota subsp. sativus] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9HWH8 | WD40 repeat-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_05437 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 64.747215 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 65.050438 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 56.267231 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 62.048054 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 57.207287 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 89.87989 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 71.330544 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 99.159523 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 92.508049 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 92.132675 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 100.876671 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 91.719727 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 94.447861 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 83.749657 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.208103 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.749277 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 15.09479 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 30.293272 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 21.564074 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 30.378288 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 35.792889 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 19.626612 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 26.117352 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 20.804327 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 23.791059 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 34.816727 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 21.066505 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 29.221548 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 25.470173 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 32.567436 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 30.168047 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 26.15308 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 84.088348 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 50.418091 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 92.974541 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 32.303673 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 24.989489 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 30.245832 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 70.607613 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 50.645439 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 37.162106 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 93.278366 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 88.625435 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 89.276634 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 72.761063 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 55.325153 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 61.360218 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 53.445782 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 55.808731 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 51.540901 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology