halophFGD

Basic Information

Locus ID: Ag7G01572

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: FTSH6

Description: Belongs to the AAA ATPase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	190216536	190218516	+	Ag7G01572

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.94	49,073.57 Da	36.41	98.60	-0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00009	AAA	37	179	1.66302E-27	-
Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	46	178	2.6E-43	IPR003959
Pfam	PF01434	Peptidase family M41	259	359	5.4E-38	IPR000642
Pfam	PF17862	AAA+ lid domain	201	244	5.4E-12	IPR041569
Pfam	PF01434	Peptidase family M41	366	428	2.7E-12	IPR000642
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	6	249	1.69E-67	IPR027417
SUPERFAMILY	SSF140990	FtsH protease domain-like	261	433	8.37E-56	IPR037219
Gene3D	G3DSA:3.40.50.300	-	1	178	4.6E-69	IPR027417
Gene3D	G3DSA:1.10.8.60	-	181	259	4.1E-21	-
Gene3D	G3DSA:1.20.58.760	Peptidase M41	260	434	1.1E-53	IPR037219
SMART	SM00382	AAA_5	42	181	2.2E-23	IPR003593
TIGRFAM	TIGR01241	FtsH_fam: ATP-dependent metallopeptidase HflB	3	429	7.5E-182	IPR005936
ProSitePatterns	PS00674	AAA-protein family signature.	149	167	-	IPR003960
Hamap	MF_01458	ATP-dependent zinc metalloprotease FtsH [ftsH].	2	437	30.913515	IPR005936

Gene Ontology

Biological Process:

GO:0006508 (proteolysis)

Molecular Function:

GO:0004176 (ATP-dependent peptidase activity) GO:0004222 (metalloendopeptidase activity) GO:0005524 (ATP binding) GO:0016887 (ATP hydrolysis activity)

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K03798 (cell division protease FtsH [EC:3.4.24.-])

Best hit

Source	Best Hit ID	Description
TAIR	AT5G15250.1	FTSH protease 6. Encodes an FtsH protease that is localized to the chloroplast. AtFtsH6 is involved in the degradation of both Lhcb3 and Lhcb1 during senescence and high-light acclimation.
RefSeq	XP_017224508.1	PREDICTED: ATP-dependent zinc metalloprotease FTSH 6, chloroplastic-like [Daucus carota subsp. sativus]
Swiss-Prot	Q1PDW5	ATP-dependent zinc metalloprotease FTSH 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FTSH6 PE=2 SV=1
TrEMBL	A0A166I4A6	AAA domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003385 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	21.703709	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	14.790521	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	20.449625	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	14.465783	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	14.100377	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	3.857124	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	3.51416	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	2.4202	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.094297	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.098719	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.116058	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.056668	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.055541	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.027101	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.448051		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.191643		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.022069		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.037564	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.374851	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.317111	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.651693	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg19289, jg19953
Aizoaceae	Mesembryanthemum crystallinum	2	gene_11506, gene_21200
Amaranthaceae	Atriplex hortensis	2	Ah006893, Ah011706
Amaranthaceae	Beta vulgaris	1	BVRB_9g208930
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg11988, Sbi_jg46917
Amaranthaceae	Salicornia europaea	1	Seu_jg21206
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00008028, GOSA_00009546
Amaranthaceae	Suaeda glauca	5	Sgl25093, Sgl30263, Sgl30264, Sgl80395, Sgl82857
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000009318, gene:ENSEOMG00000018298 ... gene:ENSEOMG00000029667, gene:ENSEOMG00000038290, gene:ENSEOMG00000052325
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.4AG0014600, CQ.Regalona.r1.4BG0013110 ... CQ.Regalona.r1.9AG0009750, CQ.Regalona.r1.9BG0012940
Anacardiaceae	Pistacia vera	2	pistato.v30089070, pistato.v30194620
Apiaceae	Apium graveolens	3	Ag4G02095, Ag7G01572, Ag8G00882
Arecaceae	Cocos nucifera	3	COCNU_07G005770, COCNU_08G007580, scaffold004312G000050
Arecaceae	Phoenix dactylifera	2	gene-LOC103705127, gene-LOC103716421
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.29.V1.1, AsparagusV1_08.207.V1.1
Asteraceae	Flaveria trinervia	3	Ftri11G04105, Ftri11G09617, Ftri6G33508
Brassicaceae	Arabidopsis thaliana	3	AT1G06430.1, AT2G30950.1, AT5G15250.2
Brassicaceae	Eutrema salsugineum	3	Thhalv10006971m.g.v1.0, Thhalv10016003m.g.v1.0 ... Thhalv10016334m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g05190.v2.2, Sp4g13440.v2.2
Brassicaceae	Brassica nigra	4	BniB02g047630.2N, BniB03g001870.2N, BniB06g020050.2N ... BniB06g044190.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G2895, Ceq08G0283
Casuarinaceae	Casuarina glauca	1	Cgl02G3017
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno05g13510
Dunaliellaceae	Dunaliella salina	1	Dusal.1123s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g07490
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-9363
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.195, evm.TU.LG04.1680
Plantaginaceae	Plantago ovata	2	Pov_00008613, Pov_00020264
Plumbaginaceae	Limonium bicolor	2	Lb3G19529, Lb4G21847
Poaceae	Echinochloa crus-galli	6	AH06.2622, AH06.908, BH06.2425, BH06.941, CH06.1035 ... CH06.2711
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_6AG0514730, gene-QOZ80_6AG0547740 ... gene-QOZ80_6BG0466420, gene-QOZ80_6BG0501390
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.7HG0666580.1, HORVU.MOREX.r3.7HG0736940.1
Poaceae	Lolium multiflorum	1	gene-QYE76_028901
Poaceae	Oryza coarctata	4	Oco11G005860, Oco11G014930, Oco12G005930, Oco12G015100
Poaceae	Oryza sativa	2	LOC_Os06g12370.1, LOC_Os06g45820.1
Poaceae	Paspalum vaginatum	2	gene-BS78_10G096000, gene-BS78_10G223000
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0103211, Pt_Chr0401297
Poaceae	Sporobolus alterniflorus	5	Chr02G031610, Chr05G009470, Chr10G019980, Chr11G002680 ... Chr14G004380
Poaceae	Thinopyrum elongatum	2	Tel7E01G347500, Tel7E01G797300
Poaceae	Triticum dicoccoides	4	gene_TRIDC7AG023390, gene_TRIDC7AG065720 ... gene_TRIDC7BG013870, gene_TRIDC7BG059370
Poaceae	Triticum aestivum	6	TraesCS7A02G188300.1, TraesCS7A02G471000.2 ... TraesCS7B02G093400.1, TraesCS7B02G373000.1, TraesCS7D02G189400.1, TraesCS7D02G458400.1
Poaceae	Zea mays	3	Zm00001eb274190_P001, Zm00001eb279710_P001 ... Zm00001eb389930_P001
Poaceae	Zoysia japonica	4	nbis-gene-35128, nbis-gene-40527, nbis-gene-51395 ... nbis-gene-9793
Poaceae	Zoysia macrostachya	4	Zma_g29394, Zma_g30971, Zma_g31627, Zma_g33231
Portulacaceae	Portulaca oleracea	4	evm.TU.LG06.1033, evm.TU.LG06.1411, evm.TU.LG11.229 ... evm.TU.LG11.723
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g28680
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.48567.1, evm.TU.Scaffold_6_RagTag.280 ... evm.TU.Scaffold_9_RagTag.1171
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-11756, nbisL1-mrna-15135, nbisL1-mrna-21003
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-2168, nbisL1-mrna-727, nbisL1-mrna-8632
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-11171, nbisL1-mrna-18672, nbisL1-mrna-236
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000006l.752, evm.TU.utg000011l.163
Rhizophoraceae	Kandelia obovata	1	Maker00013627
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-11794, nbisL1-mrna-1333, nbisL1-mrna-9791
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-17335, nbisL1-mrna-19976, nbisL1-mrna-4899
Salicaceae	Populus euphratica	5	populus_peu24528, populus_peu24538, populus_peu27152 ... populus_peu31144, populus_peu31168
Solanaceae	Lycium barbarum	2	gene-LOC132618745, gene-LOC132622252
Solanaceae	Solanum chilense	2	SOLCI005316100, SOLCI005367300
Solanaceae	Solanum pennellii	2	gene-LOC107009138, gene-LOC107025769
Tamaricaceae	Reaumuria soongarica	2	STRG.8244_chr05_+, gene_16959
Tamaricaceae	Tamarix chinensis	2	TC03G1919, TC06G0682
Zosteraceae	Zostera marina	2	Zosma03g30160.v3.1, Zosma04g25210.v3.1