Basic Information
Locus ID:
Ag7G01548
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
AarF domain-containing protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 188790750 | 188801322 | - | Ag7G01548 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 62,103.28 Da | 34.74 | 103.09 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13969 | ADCK1-like | 130 | 381 | 2.17252E-130 | - |
| Pfam | PF03109 | ABC1 family | 150 | 264 | 6.4E-39 | IPR004147 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 132 | 368 | 2.53E-24 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 161 | 358 | 8.5E-10 | - |
| SMART | SM00220 | serkin_6 | 161 | 467 | 0.0097 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65950.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017236890.1 | PREDICTED: uncharacterized aarF domain-containing protein kinase 1 [Daucus carota subsp. sativus] | 0 |
| Q5M7P6 | AarF domain-containing protein kinase 1 OS=Xenopus tropicalis OX=8364 GN=adck1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7BH95 | ABC1 domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_037037 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.81734 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.026127 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.73503 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.18615 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.185137 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.04538 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.527688 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.941981 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.317706 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 11.445543 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 16.242147 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 13.061596 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.132618 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.981958 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.818997 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 11.918324 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.040185 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.397143 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.023611 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.741428 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.762254 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 12.875042 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 12.487734 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 13.646095 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 11.898093 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.177933 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.598025 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.041369 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.952642 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.983271 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.518499 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.135773 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.929645 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.662865 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.770891 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.433063 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.750918 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.347332 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.133793 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.338152 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.108955 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.101258 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.78554 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 12.718468 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 11.24369 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.911105 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 12.878101 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.888664 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 10.082318 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 11.865232 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31000 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13036 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033158 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g038010 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19870, Sbi_jg44211 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17803 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010589 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl64578, Sgl69028 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000014885, gene:ENSEOMG00000017564 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2AG0008000 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30189180 |
| Apiaceae | Apium graveolens | 1 | Ag7G01548 |
| Arecaceae | Cocos nucifera | 1 | scaffold015965G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103713036, gene-LOC120110984 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.3615.V1.1, AsparagusV1_07.3616.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G22166 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G65950.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018274m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g21020.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g043370.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0592 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0559 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g10500 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1201s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g25270 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.42 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021204 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01660 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.677, BH09.571, CH09.754 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0685880, gene-QOZ80_9BG0712020 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0245470.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_066375, gene-QYE76_066781 |
| Poaceae | Oryza coarctata | 2 | Oco21G007090, Oco22G008200 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g34750.1, LOC_Os11g34830.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G165700, gene-BS78_05G280400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103271, Pt_Chr0103289 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G005950, Chr17G005350 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G251100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG018500, gene_TRIDC3BG023450 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G140300.1, TraesCS3B02G164200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb201710_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45749 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18955 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1303, evm.TU.LG25.34 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g05000 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.774, evm.TU.Scaffold_3_RagTag.775 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1184 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17245 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6451 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.741 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012500 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5205 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13210 |
| Salicaceae | Populus euphratica | 1 | populus_peu09784 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132615297 |
| Solanaceae | Solanum chilense | 1 | SOLCI005855500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018120 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9869 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0989 |
| Zosteraceae | Zostera marina | 3 | Zosma01g10480.v3.1, Zosma07g04520.v3.1, Zosma07g04530.v3.1 |