halophFGD

Basic Information

Locus ID: Ag7G01451

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	176127095	176137585	-	Ag7G01451

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.98	67,388.14 Da	29.36	96.31	-0.22

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08263	Leucine rich repeat N-terminal domain	19	59	3.5E-9	IPR013210
Pfam	PF00069	Protein kinase domain	282	553	1.5E-43	IPR000719
Pfam	PF13855	Leucine rich repeat	82	122	3.2E-7	IPR001611
SUPERFAMILY	SSF52058	L domain-like	22	193	8.5E-35	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	261	556	1.64E-75	IPR011009
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	20	203	5.6E-48	IPR032675
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	358	575	1.2E-63	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	250	357	6.9E-36	-
SMART	SM00220	serkin_6	281	555	1.7E-26	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	281	560	35.255154	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	404	416	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	287	309	-	IPR017441

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G10290.1	leucine-rich repeat transmembrane protein kinase family protein.
RefSeq	XP_017226005.1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Daucus carota subsp. sativus]
Swiss-Prot	C0LGT1	Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana OX=3702 GN=At5g10290 PE=1 SV=1
TrEMBL	A0A166I7T0	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003490 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	32.497288	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	35.145386	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	35.246063	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	38.827435	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	35.091129	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	31.278559	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	23.501669	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	14.974594	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	91.485176	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	85.674385	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	101.920784	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	85.045921	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	84.218132	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	73.411324	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	62.803001	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	57.524441	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	64.065056	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	66.098549	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	52.514771	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	54.266258	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	63.547779	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	74.487045	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	74.598457	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	65.076958	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	60.827625	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	74.325165	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	63.540722	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	59.671558	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	68.603416	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	15.093381		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	26.947151		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	16.914946		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	22.462976		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	25.69607		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	26.668118		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	19.181746		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	10.078841		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	12.381828		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	47.522469	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	42.266605	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	32.957535	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	104.979324	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	132.48111	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	128.028107	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	135.657639	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	105.305748	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	131.737213	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	57.566032	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	65.579605	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	66.314514	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg17036, jg30907, jg31113, jg39516
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10288, gene_16474
Amaranthaceae	Atriplex hortensis	2	Ah005424, Ah027343
Amaranthaceae	Beta vulgaris	2	BVRB_4g078930, BVRB_6g134990
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg12725, Sbi_jg53174, Sbi_jg62334
Amaranthaceae	Salicornia europaea	2	Seu_jg8712, Seu_jg904
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00007323, GOSA_00010299
Amaranthaceae	Suaeda glauca	4	Sgl24027, Sgl29209, Sgl33829, Sgl39193
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000001653, gene:ENSEOMG00000002870 ... gene:ENSEOMG00000008239, gene:ENSEOMG00000026625, gene:ENSEOMG00000027424, gene:ENSEOMG00000041573
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.2AG0003030, CQ.Regalona.r1.4AG0005440 ... CQ.Regalona.r1.4BG0005410, CQ.Regalona.r1.6AG0024380, CQ.Regalona.r1.6BG0025690
Anacardiaceae	Pistacia vera	4	pistato.v30064310, pistato.v30202220, pistato.v30258830 ... pistato.v30258840
Apiaceae	Apium graveolens	2	Ag7G01451, Ag7G02178
Arecaceae	Cocos nucifera	4	COCNU_03G007270, COCNU_05G005790, COCNU_05G005800 ... COCNU_13G003120
Arecaceae	Phoenix dactylifera	3	gene-LOC103701542, gene-LOC103707936, gene-SERK3
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.244.V1.1, AsparagusV1_07.2588.V1.1
Asteraceae	Flaveria trinervia	2	Ftri13G27876, Ftri1G04640
Brassicaceae	Arabidopsis thaliana	3	AT5G10290.1, AT5G63710.1, AT5G65240.2
Brassicaceae	Eutrema salsugineum	3	Thhalv10003847m.g.v1.0, Thhalv10003898m.g.v1.0 ... Thhalv10013001m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g26810.v2.2, Sp2g28340.v2.2, Sp6g33140.v2.2
Brassicaceae	Brassica nigra	3	BniB05g026750.2N, BniB06g012010.2N, BniB06g013550.2N
Casuarinaceae	Casuarina equisetifolia	6	Ceq05G1694, Ceq05G2315, Ceq05G2320, Ceq05G2333, Ceq06G1400 ... Ceq06G1932
Casuarinaceae	Casuarina glauca	5	Cgl05G2435, Cgl05G2448, Cgl05G2483, Cgl06G1463, Cgl06G2028
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno02g02630
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate03g06000, gene.Thate05g11220
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-10216, nbisL1-mrna-10626
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.646, evm.TU.LG02.918
Plantaginaceae	Plantago ovata	2	Pov_00020976, Pov_00029082
Plumbaginaceae	Limonium bicolor	3	Lb1G07237, Lb2G12694, Lb2G13767
Poaceae	Echinochloa crus-galli	5	AH01.915, AH07.1246, BH01.1046, BH07.1336, CH07.1053
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0109510, gene-QOZ80_2BG0163040 ... gene-QOZ80_3AG0219730, gene-QOZ80_3BG0264960
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0291050.1
Poaceae	Lolium multiflorum	2	gene-QYE76_022252, gene-QYE76_062777
Poaceae	Oryza coarctata	3	Oco03G007770, Oco05G021160, Oco06G022020
Poaceae	Oryza sativa	2	LOC_Os02g18320.1, LOC_Os03g49620.3
Poaceae	Paspalum vaginatum	2	gene-BS78_01G111700, gene-BS78_04G122100
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0104798, Pt_Chr0201917
Poaceae	Sporobolus alterniflorus	6	Chr04G026580, Chr06G031330, Chr07G025580, Chr09G000500 ... Chr12G029990, Chr15G022640
Poaceae	Thinopyrum elongatum	2	Tel3E01G488700, Tel4E01G075700
Poaceae	Triticum dicoccoides	2	gene_TRIDC3AG044420, gene_TRIDC3BG050320
Poaceae	Triticum aestivum	3	TraesCS3A02G302200.1, TraesCS3B02G334400.2 ... TraesCS3D02G299800.1
Poaceae	Zea mays	2	Zm00001eb054260_P003, Zm00001eb237190_P001
Poaceae	Zoysia japonica	1	nbis-gene-50983
Poaceae	Zoysia macrostachya	2	Zma_g12587, Zma_g683
Portulacaceae	Portulaca oleracea	8	evm.TU.LG05.636, evm.TU.LG05.637, evm.TU.LG08.1220 ... evm.TU.LG18.1488, evm.TU.LG20.392, evm.TU.LG22.593, evm.TU.LG25.684, evm.TU.LG25.685
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g29570
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_3_RagTag.1076, evm.TU.Scaffold_6_RagTag.1399
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-16354, nbisL1-mrna-919
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-17697, nbisL1-mrna-8432
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-1202, nbisL1-mrna-2335
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000011l.890, evm.TU.utg000019l.600
Rhizophoraceae	Kandelia obovata	2	Maker00001784, Maker00008277
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-13410, nbisL1-mrna-6118
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-1766, nbisL1-mrna-3872
Salicaceae	Populus euphratica	5	populus_peu01477, populus_peu01498, populus_peu13758 ... populus_peu19650, populus_peu22916
Solanaceae	Lycium barbarum	4	gene-LOC132612627, gene-LOC132637631, gene-LOC132639989 ... gene-LOC132639990
Solanaceae	Solanum chilense	3	SOLCI001671300, SOLCI003744500, SOLCI004458900
Solanaceae	Solanum pennellii	3	gene-LOC107004712, gene-LOC107015150, gene-LOC107020602
Tamaricaceae	Reaumuria soongarica	3	STRG.16587_chr06_+, STRG.982_chr01_+, gene_12937
Tamaricaceae	Tamarix chinensis	3	TC01G1563, TC05G2157, TC09G0033
Zosteraceae	Zostera marina	1	Zosma06g16940.v3.1