Basic Information
Locus ID:
Ag7G01448
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
CDPK-related kinase 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 175308893 | 175316977 | + | Ag7G01448 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 65,880.54 Da | 48.68 | 82.25 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 134 | 396 | 4.55465E-131 | - |
| Pfam | PF00069 | Protein kinase domain | 135 | 397 | 1.5E-69 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 127 | 418 | 2.29E-82 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 423 | 575 | 2.31E-16 | IPR011992 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 128 | 223 | 5.6E-23 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 415 | 505 | 3.6E-17 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 224 | 407 | 3.7E-58 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 421 | 546 | 3.6E-17 | - |
| SMART | SM00220 | serkin_6 | 135 | 397 | 4.5E-99 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 135 | 397 | 50.321999 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 438 | 473 | 9.073802 | IPR002048 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 259 | 271 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 141 | 167 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 51 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46700.1 | CDPK-related kinase 3. | 0 |
| RefSeq | XP_017230707.1 | PREDICTED: CDPK-related kinase 3 [Daucus carota subsp. sativus] | 0 |
| Q9ZUZ2 | CDPK-related kinase 3 OS=Arabidopsis thaliana OX=3702 GN=CRK3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166HS80 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002984 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.51725 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.950368 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 19.399311 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 20.165718 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 17.34848 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 19.621162 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 17.457129 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 18.585697 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.058136 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 21.73469 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 22.319166 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 26.191193 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 27.928246 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 21.970531 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 13.721881 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.908302 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 13.999664 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 13.800631 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 11.062345 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 17.764471 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 16.063175 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 17.473673 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 18.583601 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 16.028088 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 12.808144 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 13.199864 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 12.328838 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.458756 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.640449 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.254187 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.668001 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.556129 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 16.076572 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 14.301362 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 17.325998 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 8.020174 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.137499 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 8.699586 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.727429 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.64982 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.877829 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 41.982857 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 28.73242 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 26.158001 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 20.940472 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 41.52557 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 15.987438 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.913144 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 16.601637 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.05106 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10284, jg29492, jg33908 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_23502, gene_3357 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah018521, Ah022796 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g002420 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg14984, Sbi_jg3858, Sbi_jg49091, Sbi_jg55795 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg26308, Seu_jg6147 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000641, GOSA_00017829 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl01236, Sgl06320, Sgl10844, Sgl16198 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000001321, gene:ENSEOMG00000014875 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0004600, CQ.Regalona.r1.2BG0026760 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30006350, pistato.v30165540 |
| Apiaceae | Apium graveolens | 2 | Ag2G02130, Ag7G01448 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G006350 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708498, gene-LOC103712190 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.1127.V1.1, AsparagusV1_04.3580.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri18G13543, Ftri3G05231, Ftri4G32586 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G46700.1, AT3G49370.1, AT5G24430.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10001366m.g.v1.0, Thhalv10003876m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g22900.v2.2, Sp4g28740.v2.2, Sp5g12700.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g000760.2N, BniB02g077300.2N, BniB06g010020.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G1280, Ceq09G1667 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1439, Cgl09G1800 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno10g07090, gene.Cymno14g08640 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g11540, gene.Thate08g18890 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.639, evm.TU.LG05.1243 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00010115, Pov_00041201 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G04064, Lb5G27376 |
| Poaceae | Echinochloa crus-galli | 5 | AH01.1610, BH01.1807, BH06.2754, CH01.1899, CH06.3100 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0113590, gene-QOZ80_2BG0166760 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0049840.1, HORVU.MOREX.r3.7HG0721290.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_030561, gene-QYE76_035305 |
| Poaceae | Oryza coarctata | 4 | Oco11G017180, Oco12G017410, Oco19G007840, Oco20G007670 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g50030.1, LOC_Os10g36710.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G179000, gene-BS78_10G276400 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0400889, Pt_Chr0401014, Pt_Chr0502884, Pt_Chr0502894 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr02G033280, Chr05G000540, Chr06G029600, Chr09G002600 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G319100, Tel7E01G651100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG027240, gene_TRIDC1BG033740 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G178400.1, TraesCS1B02G201900.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb043750_P002, Zm00001eb220460_P002 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-40771 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g31135, Zma_g33405 |
| Portulacaceae | Portulaca oleracea | 8 | evm.TU.LG01.73, evm.TU.LG02.1361, evm.TU.LG04.2105 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g12850 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.674, evm.TU.Scaffold_9_RagTag.639 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-21580, nbisL1-mrna-7424 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9635 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7437 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.185, evm.TU.utg000012l.434 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017594 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1681 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5402 |
| Salicaceae | Populus euphratica | 3 | populus_peu27511, populus_peu29397, populus_peu31502 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132632146, gene-LOC132645388 |
| Solanaceae | Solanum chilense | 2 | SOLCI004878400, SOLCI005417400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008902, gene-LOC107015314 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.26599_chr11_+, gene_3978, gene_9939 |
| Tamaricaceae | Tamarix chinensis | 3 | TC03G2040, TC06G2694, TC09G2365 |
| Zosteraceae | Zostera marina | 1 | Zosma03g26200.v3.1 |