Basic Information
Locus ID:
Ag7G01395
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Vacuolar protein sorting-associated protein 8 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 156304678 | 156321029 | - | Ag7G01395 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 212,516.00 Da | 41.28 | 90.57 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00637 | Region in Clathrin and VPS | 1424 | 1490 | 1.0E-7 | IPR000547 |
| Pfam | PF12816 | Golgi CORVET complex core vacuolar protein 8 | 925 | 1109 | 9.4E-54 | IPR025941 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 405 | 739 | 1.4E-14 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 394 | 775 | 3.3E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 435 | 479 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 482 | 527 | 88.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 690 | 727 | 72.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 454 | 488 | 8.503359 | IPR001680 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1702 | 1750 | 9.051829 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1758 | 1785 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 56 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00800.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_017246800.1 | PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q8N3P4 | Vacuolar protein sorting-associated protein 8 homolog OS=Homo sapiens OX=9606 GN=VPS8 PE=1 SV=3 | 0 | |
| TrEMBL | A0A165XYX8 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013954 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.519111 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 9.471039 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 11.424997 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.040793 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.903272 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 11.861697 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 12.441609 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.348313 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.662401 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 19.9345 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 23.723612 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 21.438713 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 20.533281 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 16.861557 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.865354 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.671425 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 8.50223 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 12.665815 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.00232 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 11.867091 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.735659 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.647871 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.456368 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.656636 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 10.196887 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 13.917069 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.06334 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.586283 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.865081 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.893695 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.874589 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.685435 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.048485 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.25306 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.038672 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.364074 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.551159 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.659006 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.40655 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.086043 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.137412 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 8.735646 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.210628 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 16.871302 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 15.412632 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 6.987058 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.650333 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.142093 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.647136 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 9.604342 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29499 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23492 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022770 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g002170 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg3814, Sbi_jg49066 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6174 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000662, GOSA_00000663 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl10812, Sgl10813, Sgl16165, Sgl16166 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013925, gene:ENSEOMG00000034769 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30006540 |
| Apiaceae | Apium graveolens | 1 | Ag7G01395 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G007990 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103697565 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2271.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G17229 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G00800.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028358m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g01320.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g043590.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0218 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0235 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g01780 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g18120 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1516, nbisL1-mrna-9556 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.617 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027916 |
| Poaceae | Echinochloa crus-galli | 5 | AH07.219, AH07.235, BH07.295, CH03.4615, CH03.4617 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0099980, gene-QOZ80_2BG0153450 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.6HG0551440.1, HORVU.MOREX.r3.7HG0724670.1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_019899 |
| Poaceae | Oryza coarctata | 2 | Oco03G001370, Oco04G001240 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g03220.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G113600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0201216 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G035690, Chr06G035710, Chr06G035720, Chr15G026910 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G187900 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC6AG010060, gene_TRIDC6BG015100 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G082800.1, TraesCS6B02G114600.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb230740_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30067 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14869 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2088, evm.TU.LG06.224 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g09910 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1235 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-20936 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8686 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21220 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.763 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009833 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1292 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4841 |
| Salicaceae | Populus euphratica | 1 | populus_peu27494 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132640575 |
| Solanaceae | Solanum chilense | 1 | SOLCI001506700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020383 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15180 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2397 |
| Zosteraceae | Zostera marina | 1 | Zosma02g15090.v3.1 |