Basic Information
Locus ID:
Ag7G01393
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Probably inactive receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 156040242 | 156045759 | + | Ag7G01393 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 95,196.32 Da | 41.67 | 87.91 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 572 | 730 | 1.7E-12 | IPR001245 |
| Pfam | PF14159 | CAAD domains of cyanobacterial aminoacyl-tRNA synthetase | 89 | 156 | 7.9E-22 | IPR025564 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 546 | 821 | 1.61E-30 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 539 | 643 | 1.5E-13 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 646 | 832 | 9.2E-21 | - |
| SMART | SM00220 | serkin_6 | 568 | 804 | 0.0033 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 568 | 826 | 16.061184 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46850.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017242637.1 | PREDICTED: probably inactive receptor-like protein kinase At2g46850 [Daucus carota subsp. sativus] | 0 |
| Q8S8N4 | Probably inactive receptor-like protein kinase At2g46850 OS=Arabidopsis thaliana OX=3702 GN=At2g46850 PE=3 SV=1 | 0 | |
| TrEMBL | A0A166HRY9 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002976 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 31.734804 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 31.839565 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 11.954132 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 15.556981 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 13.208104 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 15.096302 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.444214 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.478434 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 84.289352 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 76.325577 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 76.18026 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 57.257011 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 69.830978 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 79.853218 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 61.937496 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 75.232727 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 107.237137 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 163.246902 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 260.583099 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 156.937653 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 145.448303 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 19.58882 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 18.437567 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 42.059937 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 62.701202 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 215.622131 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 194.11969 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 281.125061 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 190.011551 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 220.153442 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 221.67952 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 204.642258 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 179.477707 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 79.685707 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 127.075539 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 215.3936 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 352.987762 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 260.466339 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 357.559998 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 643.764526 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 710.25177 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 8.122355 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.758885 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 5.531616 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 7.205645 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 7.822675 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 8.178896 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 35.313282 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.62151 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 26.437305 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1590 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022759 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g001930 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg3787, Sbi_jg49041, Sbi_jg49042 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6193 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000681 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10794, Sgl16147 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000034990, gene:ENSEOMG00000049469 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0004260, CQ.Regalona.r1.2BG0027060 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30006680 |
| Apiaceae | Apium graveolens | 1 | Ag7G01393 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G008370, COCNU_07G008380 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720391 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2178.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G03789 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G46850.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001355m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g28870.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g030430.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0220 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0229 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g04410 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6184, nbisL1-mrna-9561 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.601 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020634 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12150 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2049, BH09.2203, CH09.2351 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0306400, gene-QOZ80_4BG0337400 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0098610.1.CDS1 |
| Poaceae | Oryza coarctata | 2 | Oco07G013960, Oco08G013470 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g21090.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G197700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0300315 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr23G005760, Chr25G004810, Chr25G004840, Chr26G013830 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G069900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG002350, gene_TRIDC2BG002550 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G023200.1, TraesCS2B02G033300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb427960_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-22648 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20297 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.1348, evm.TU.LG24.1342 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.695 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10654 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3642 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11332 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.634 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013007 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10192 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7328 |
| Salicaceae | Populus euphratica | 1 | populus_peu31463 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628848 |
| Solanaceae | Solanum chilense | 1 | SOLCI007219700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107001906 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1332 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2441 |
| Zosteraceae | Zostera marina | 1 | Zosma05g00420.v3.1 |