halophFGD

Basic Information

Locus ID: Ag7G01388

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Encoded by

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	155464081	155478514	+	Ag7G01388

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.14	115,814.43 Da	37.24	84.58	-0.25

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd10810	GH38N_AMII_LAM_like	46	322	1.38913E-178	-
Pfam	PF09261	Alpha mannosidase middle domain	363	455	4.6E-18	IPR015341
Pfam	PF01074	Glycosyl hydrolases family 38 N-terminal domain	47	358	1.6E-96	IPR000602
Pfam	PF17677	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	907	1013	6.4E-9	IPR041147
Pfam	PF07748	Glycosyl hydrolases family 38 C-terminal domain	609	825	3.1E-46	IPR011682
SUPERFAMILY	SSF88713	Glycoside hydrolase/deacetylase	35	359	2.0E-112	IPR011330
SUPERFAMILY	SSF88688	Families 57/38 glycoside transferase middle domain	362	456	6.87E-27	IPR028995
SUPERFAMILY	SSF74650	Galactose mutarotase-like	468	1016	2.67E-139	IPR011013
Gene3D	G3DSA:2.70.98.30	-	607	873	1.3E-91	-
Gene3D	G3DSA:2.60.40.1360	-	894	1020	1.5E-34	-
Gene3D	G3DSA:1.20.1270.50	Glycoside hydrolase family 38, central domain	405	461	8.8E-19	IPR037094
Gene3D	G3DSA:3.20.110.10	Glycoside hydrolase 38, N terminal domain	46	326	1.5E-123	IPR027291
Gene3D	G3DSA:2.60.40.1180	-	482	599	2.5E-28	IPR013780
Gene3D	G3DSA:1.20.1270.50	Glycoside hydrolase family 38, central domain	327	404	4.1E-31	IPR037094
SMART	SM00872	Alpha_mann_mid_2	363	437	1.2E-20	IPR015341

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process) GO:0006013 (mannose metabolic process)

Molecular Function:

GO:0003824 (catalytic activity) GO:0004559 (alpha-mannosidase activity) GO:0030246 (carbohydrate binding)

KEGG Pathway

KO Term:

K01191 (alpha-mannosidase [EC:3.2.1.24])

Pathway:

ko00511 (Other glycan degradation) map00511 (Other glycan degradation)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G26720.1	Glycosyl hydrolase family 38 protein.
RefSeq	XP_017229050.1	PREDICTED: alpha-mannosidase [Daucus carota subsp. sativus]
Swiss-Prot	P94078	Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV=1
TrEMBL	A0A5B7A988	Alpha-mannosidase OS=Davidia involucrata OX=16924 GN=Din_022737 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	20.984516	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	16.633337	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	19.257114	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	17.700758	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	15.334373	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	31.55546	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	14.420478	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	16.673197	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	42.54607	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	40.47308	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	46.221989	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	68.827614	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	49.35696	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	44.328102	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	27.890436	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	28.616142	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	30.771013	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	52.86282	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	38.72842	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	32.510811	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	37.160149	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	42.246166	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	45.147671	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	41.664215	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	36.915421	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	62.122036	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	52.448082	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	47.469982	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	44.027832	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	29.86208		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	29.93325		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	20.773596		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	34.366386		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	27.268276		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	27.639685		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	31.264275		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	25.066048		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	23.501127		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	17.143021	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.245565	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.205275	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	9.326696	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	109.690811	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	157.551041	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	174.666107	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	6.553733	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	179.831131	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	33.223755	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	44.507534	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	45.696838	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg13428, jg39595, jg40510
Aizoaceae	Mesembryanthemum crystallinum	2	gene_24972, gene_24973
Amaranthaceae	Atriplex hortensis	2	Ah012639, Ah026844
Amaranthaceae	Beta vulgaris	4	BVRB_6g130460, BVRB_6g151840, BVRB_6g151860, BVRB_6g151880
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg13726, Sbi_jg42440, Sbi_jg42441, Sbi_jg45047 ... Sbi_jg45048, Sbi_jg52190
Amaranthaceae	Salicornia europaea	3	Seu_jg27107, Seu_jg27108, Seu_jg9659
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002256, GOSA_00002259, GOSA_00017535
Amaranthaceae	Suaeda glauca	7	Sgl31833, Sgl31834, Sgl33268, Sgl37111, Sgl37112, Sgl38598 ... Sgl38658
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000000675, gene:ENSEOMG00000000906 ... gene:ENSEOMG00000000961, gene:ENSEOMG00000002801, gene:ENSEOMG00000003450, gene:ENSEOMG00000003511, gene:ENSEOMG00000026057, gene:ENSEOMG00000026245, gene:ENSEOMG00000027806
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.6AG0008760, CQ.Regalona.r1.6AG0008770 ... CQ.Regalona.r1.6AG0019940, CQ.Regalona.r1.6BG0009560, CQ.Regalona.r1.6BG0009570, CQ.Regalona.r1.6BG0021010
Anacardiaceae	Pistacia vera	3	pistato.v30012530, pistato.v30021330, pistato.v30210160
Apiaceae	Apium graveolens	2	Ag7G01388, Ag7G02415
Arecaceae	Cocos nucifera	4	COCNU_02G015710, COCNU_07G002430, COCNU_07G002440 ... COCNU_15G005680
Arecaceae	Phoenix dactylifera	3	gene-LOC103698444, gene-LOC103706173, gene-LOC103708053
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.1219.V1.1, AsparagusV1_04.2142.V1.1
Asteraceae	Flaveria trinervia	4	Ftri18G02175, Ftri18G08656, Ftri18G15101, Ftri1G23261
Brassicaceae	Arabidopsis thaliana	3	AT3G26720.1, AT5G13980.1, AT5G66150.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10003575m.g.v1.0, Thhalv10003577m.g.v1.0 ... Thhalv10012546m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g15840.v2.2, Sp2g30540.v2.2, Sp6g30020.v2.2
Brassicaceae	Brassica nigra	3	BniB02g066980.2N, BniB07g044560.2N, BniB08g006640.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq01G1939, Ceq06G0156, Ceq06G0157, Ceq06G0158, Ceq08G0040
Casuarinaceae	Casuarina glauca	4	Cgl01G2105, Cgl06G0172, Cgl06G0173, Cgl08G0041
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno05g01950
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g22290, gene.Thate01g26240
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-10889, nbisL1-mrna-2318
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.2780, evm.TU.LG05.55
Plantaginaceae	Plantago ovata	3	Pov_00016919, Pov_00033050, Pov_00038726
Plumbaginaceae	Limonium bicolor	6	Lb3G18068, Lb4G22329, Lb4G22330, Lb4G22331, Lb4G22436 ... Lb4G22437
Poaceae	Echinochloa crus-galli	7	AH01.2593, AH01.2594, AH04.1449, BH04.1470, CH01.3114 ... CH01.3117, CH04.1677
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_2AG0119610, gene-QOZ80_9AG0687140 ... gene-QOZ80_9BG0713390
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0019680.1, HORVU.MOREX.r3.5HG0526940.1
Poaceae	Lolium multiflorum	3	gene-QYE76_003603, gene-QYE76_003653, gene-QYE76_070688
Poaceae	Oryza coarctata	3	Oco19G000670, Oco21G006420, Oco22G007540
Poaceae	Oryza sativa	2	LOC_Os10g05069.1, LOC_Os11g32260.1
Poaceae	Paspalum vaginatum	6	gene-BS78_01G260800, gene-BS78_01G260900, gene-BS78_K024300 ... gene-BS78_01G261000, gene-BS78_05G155800, gene-BS78_K147300
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0103105, Pt_Chr0504909, Pt_Chr0704185, Pt_Chr0704203
Poaceae	Sporobolus alterniflorus	5	Chr07G016910, Chr20G008310, Chr29G007730, Chr31G005910 ... Chr31G005940
Poaceae	Thinopyrum elongatum	2	Tel1E01G171400, Tel5E01G766600
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG012450, gene_TRIDC1BG015320 ... gene_TRIDC1BG015330, gene_TRIDC2AG064390, gene_TRIDC5AG068880, gene_TRIDC5BG074340
Poaceae	Triticum aestivum	8	TraesCS1A02G087500.2, TraesCS1B02G106400.2 ... TraesCS1B02G106500.1, TraesCS1D02G088800.1, TraesCS2A02G451000.1, TraesCS5A02G483300.1, TraesCS5B02G496400.1, TraesCS5D02G496800.2
Poaceae	Zea mays	3	Zm00001eb026300_P001, Zm00001eb026330_P001 ... Zm00001eb113240_P001
Poaceae	Zoysia japonica	2	nbis-gene-42299, nbis-gene-45656
Poaceae	Zoysia macrostachya	2	Zma_g15836, Zma_g18902
Portulacaceae	Portulaca oleracea	8	evm.TU.LG03.2233, evm.TU.LG03.2234, evm.TU.LG03.2236 ... evm.TU.LG05.332, evm.TU.LG17.1285, evm.TU.LG17.1286, evm.TU.LG17.1288, evm.TU.LG25.979
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g04310, gene.Posoc05g14260
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_11_RagTag.1193, evm.TU.Scaffold_3_RagTag.85 ... evm.TU.Scaffold_11_RagTag.237, evm.TU.Scaffold_11_RagTag.238
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-12382, nbisL1-mrna-12494, nbisL1-mrna-14182 ... nbisL1-mrna-14183, nbisL1-mrna-237, nbisL1-mrna-243, nbisL1-mrna-246
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-14327, nbisL1-mrna-18667, nbisL1-mrna-3055 ... nbisL1-mrna-3056
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-12761, nbisL1-mrna-14326, nbisL1-mrna-14327 ... nbisL1-mrna-5886
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000005l.218, evm.TU.utg000005l.219 ... evm.TU.utg000010l.248, evm.TU.utg000019l.1159
Rhizophoraceae	Kandelia obovata	4	Maker00006815, Maker00008942, Maker00010101, Maker00010260
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-379, nbisL1-mrna-380, nbisL1-mrna-618 ... nbisL1-mrna-6567
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-18974, nbisL1-mrna-18975, nbisL1-mrna-2435
Salicaceae	Populus euphratica	6	populus_peu23271, populus_peu27111, populus_peu27112 ... populus_peu30350, populus_peu30953, populus_peu30954
Solanaceae	Lycium barbarum	3	gene-LOC132599619, gene-LOC132625127, gene-LOC132625128
Solanaceae	Solanum chilense	2	SOLCI001430500, SOLCI005536800
Solanaceae	Solanum pennellii	2	gene-LOC107009314, gene-LOC107023054
Tamaricaceae	Reaumuria soongarica	3	gene_13607, gene_16258, gene_2130
Tamaricaceae	Tamarix chinensis	3	TC01G3392, TC03G1178, TC09G0119
Zosteraceae	Zostera marina	2	Zosma01g25650.v3.1, Zosma02g01290.v3.1