halophFGD

Basic Information

Locus ID: Ag7G01379

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: E3 ubiquitin-protein ligase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	154357795	154360573	+	Ag7G01379

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.80	29,148.01 Da	52.30	68.46	-0.29

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16745	RING-HC_AtRMA_like	49	101	1.53356E-24	-
Pfam	PF00097	Zinc finger, C3HC4 type (RING finger)	51	99	1.3E-7	IPR018957
SUPERFAMILY	SSF57850	RING/U-box	43	112	3.77E-16	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	30	113	1.1E-16	IPR013083
SMART	SM00184	ring_2	51	99	6.2E-9	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	51	100	12.430266	IPR001841
ProSitePatterns	PS00518	Zinc finger RING-type signature.	66	75	-	IPR017907

Gene Ontology

Molecular Function:

GO:0046872 (metal ion binding)

KEGG Pathway

KO Term:

K10666 (E3 ubiquitin-protein ligase RNF5/185 [EC:2.3.2.27])

Pathway:

ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G27470.1	RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase.
RefSeq	XP_017237730.1	PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Daucus carota subsp. sativus]
Swiss-Prot	Q6R567	E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1
TrEMBL	A0A6L5B9R1	RING-type E3 ubiquitin transferase OS=Apium graveolens OX=4045 GN=AG4045_004816 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	15.125475	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	18.928047	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	22.344194	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	22.903061	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	25.74217	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	27.206123	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	16.424002	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	28.170265	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	13.548507	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	15.184358	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	10.914878	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	11.082916	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	12.249911	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	10.283213	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	32.763664	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	29.38345	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	22.840105	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	20.093422	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	17.332968	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	14.341515	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	11.497794	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	8.461566	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	9.684228	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	9.159719	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	10.02297	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	11.62083	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	8.683037	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	9.485426	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	11.568376	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	14.79445		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	13.335913		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	8.249402		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	25.880142		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	12.896934		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	41.489799		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	17.582586		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	8.278612		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	10.879383		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	4.593789	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	4.420691	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	3.183211	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	16.147049	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	19.917345	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	24.61277	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	26.294079	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	11.605367	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	19.384016	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	22.101704	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	14.636928	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	15.936105	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg20294, jg22047, jg24457, jg24878, jg38293, jg38671
Aizoaceae	Mesembryanthemum crystallinum	3	gene_21048, gene_22244, gene_7442
Amaranthaceae	Atriplex hortensis	4	Ah008134, Ah008135, Ah012155, Ah018023
Amaranthaceae	Beta vulgaris	2	BVRB_8g183250, BVRB_9g206580
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg11794, Sbi_jg18675, Sbi_jg26105, Sbi_jg37114 ... Sbi_jg46609, Sbi_jg51833, Sbi_jg9946
Amaranthaceae	Salicornia europaea	3	Seu_jg18781, Seu_jg21028, Seu_jg4939
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00006893, GOSA_00016791, GOSA_00017032
Amaranthaceae	Suaeda glauca	4	Sgl12979, Sgl28212, Sgl80066, Sgl82503
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000010123, gene:ENSEOMG00000011280 ... gene:ENSEOMG00000017467, gene:ENSEOMG00000033100, gene:ENSEOMG00000039857, gene:ENSEOMG00000042624, gene:ENSEOMG00000045911
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.4BG0020520, CQ.Regalona.r1.8AG0005230 ... CQ.Regalona.r1.8BG0005330, CQ.Regalona.r1.9AG0007250, CQ.Regalona.r1.9BG0015150
Anacardiaceae	Pistacia vera	1	pistato.v30088710
Apiaceae	Apium graveolens	5	Ag11G03384, Ag2G01751, Ag7G00742, Ag7G01379, AgUnG00885
Arecaceae	Cocos nucifera	4	COCNU_07G012380, COCNU_07G012390, COCNU_08G010110 ... contig69389235G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103698249, gene-LOC103698721, gene-LOC103712095 ... gene-LOC103721864
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.914.V1.1, AsparagusV1_04.767.V1.1 ... AsparagusV1_07.2081.V1.1
Asteraceae	Flaveria trinervia	5	Ftri13G14743, Ftri14G00577, Ftri15G14345, Ftri5G12026 ... Ftri5G26840
Brassicaceae	Arabidopsis thaliana	3	AT4G03510.1, AT4G27470.1, AT4G28270.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10014518m.g.v1.0, Thhalv10026108m.g.v1.0 ... Thhalv10026313m.g.v1.0, Thhalv10028914m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp6g03530.v2.2, Sp7g25410.v2.2, Sp7g26230.v2.2
Brassicaceae	Brassica nigra	7	BniB02g082960.2N, BniB02g083450.2N, BniB03g011830.2N ... BniB03g012100.2N, BniB05g009260.2N, BniB05g009910.2N, BniB08g046290.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq01G1023, Ceq01G2296, Ceq02G2607
Casuarinaceae	Casuarina glauca	4	Cgl01G1136, Cgl01G1194, Cgl01G2599, Cgl02G2691
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno14g00520
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate04g00910, gene.Thate08g23080
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-1073, nbisL1-mrna-5757, nbisL1-mrna-9196 ... nbisL1-mrna-9382, nbisL1-mrna-9385
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG04.1858, evm.TU.LG05.1368, evm.TU.LG05.1616 ... evm.TU.LG12.963
Plantaginaceae	Plantago ovata	4	Pov_00004522, Pov_00005617, Pov_00008482, Pov_00031366
Plumbaginaceae	Limonium bicolor	3	Lb1G00151, Lb2G12182, Lb3G19283
Poaceae	Echinochloa crus-galli	4	AH07.2766, BH07.2575, CH07.2639, CH09.1999
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0138790, gene-QOZ80_2BG0194470 ... gene-QOZ80_4AG0309570, gene-QOZ80_4BG0340620
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0183830.1.CDS1 ... HORVU.MOREX.r3.6HG0598420.1.CDS1
Poaceae	Lolium multiflorum	4	gene-QYE76_023940, gene-QYE76_023941, gene-QYE76_045161 ... gene-QYE76_045222
Poaceae	Oryza coarctata	4	Oco03G016380, Oco04G017120, Oco07G011330, Oco08G011090
Poaceae	Oryza sativa	2	LOC_Os02g42690.3, LOC_Os04g44820.1
Poaceae	Paspalum vaginatum	2	gene-BS78_04G208200, gene-BS78_06G168500
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0301935
Poaceae	Sporobolus alterniflorus	6	Chr09G025030, Chr13G006490, Chr23G008090, Chr25G006640 ... Chr26G011630, Chr30G006550
Poaceae	Thinopyrum elongatum	2	Tel2E01G642700, Tel6E01G448900
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG053920, gene_TRIDC2BG056650 ... gene_TRIDC5AG007650, gene_TRIDC5BG009080, gene_TRIDC6AG036440, gene_TRIDC6BG043240
Poaceae	Triticum aestivum	6	TraesCS2A02G372600.1.cds1, TraesCS2B02G389600.1.cds1 ... TraesCS2D02G368800.1.cds1, TraesCS6A02G236100.1.cds1, TraesCS6B02G264500.1.cds1, TraesCS6D02G218600.1.cds1
Poaceae	Zea mays	3	Zm00001eb075760_P001, Zm00001eb248510_P001 ... Zm00001eb427210_P001
Poaceae	Zoysia japonica	2	nbis-gene-37161, nbis-gene-9363
Poaceae	Zoysia macrostachya	3	Zma_g13980, Zma_g20108, Zma_g21672
Portulacaceae	Portulaca oleracea	9	evm.TU.LG01.54, evm.TU.LG02.707, evm.TU.LG04.696 ... evm.TU.LG06.1079, evm.TU.LG07.1020, evm.TU.LG11.442, evm.TU.LG18.1850, evm.TU.LG20.55, evm.TU.LG20.56
Posidoniaceae	Posidonia oceanica	1	gene.Posoc06g04570
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_13_RagTag.229, evm.TU.Scaffold_5_RagTag.1365 ... evm.TU.Scaffold_9_RagTag.1251, evm.TU.Scaffold_9_RagTag.163
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-11217, nbisL1-mrna-11880, nbisL1-mrna-20918 ... nbisL1-mrna-21896, nbisL1-mrna-29477
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-17419, nbisL1-mrna-21100, nbisL1-mrna-2412 ... nbisL1-mrna-8702, nbisL1-mrna-9586
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-11097, nbisL1-mrna-20907, nbisL1-mrna-21237 ... nbisL1-mrna-7534
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000003l.36, add.evm.TU.utg000006l.322 ... add.evm.TU.utg000006l.48, add.evm.TU.utg000015l.51, evm.TU.utg000003l.773
Rhizophoraceae	Kandelia obovata	2	Maker00009557, Maker00013106
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-17227, nbisL1-mrna-19124, nbisL1-mrna-19446 ... nbisL1-mrna-20385, nbisL1-mrna-20817
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-16893, nbisL1-mrna-21690, nbisL1-mrna-4824 ... nbisL1-mrna-7098, nbisL1-mrna-7135
Salicaceae	Populus euphratica	6	populus_peu00509, populus_peu10071, populus_peu16836 ... populus_peu17563, populus_peu18191, populus_peu18748
Solanaceae	Lycium barbarum	12	gene-LOC132617177, gene-LOC132617807, gene-LOC132622787 ... gene-LOC132622985, gene-LOC132630412, gene-LOC132630419, gene-LOC132630461, gene-LOC132630468, gene-LOC132630486, gene-LOC132636480, gene-LOC132636598, gene-LOC132636599
Solanaceae	Solanum chilense	8	SOLCI000578200, SOLCI002997100, SOLCI005738900 ... SOLCI006342800, SOLCI006368600, SOLCI006368700, SOLCI006693000, SOLCI007033200
Solanaceae	Solanum pennellii	8	gene-LOC107005321, gene-LOC107006800, gene-LOC107009142 ... gene-LOC107024103, gene-LOC107026408, gene-LOC107032175, gene-LOC107032257, gene-LOC107032493
Tamaricaceae	Reaumuria soongarica	3	STRG.27107_chr04_+, gene_13458, gene_16567
Tamaricaceae	Tamarix chinensis	3	TC01G2620, TC07G1284, TC07G2141
Zosteraceae	Zostera marina	3	Zosma01g35250.v3.1, Zosma03g16890.v3.1, Zosma05g24220.v3.1