Basic Information
Locus ID:
Ag7G01365
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
ARP2
Description:
Belongs to the actin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 152866973 | 152878228 | - | Ag7G01365 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 44,238.47 Da | 39.22 | 89.36 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00012 | NBD_sugar-kinase_HSP70_actin | 7 | 190 | 5.71441E-15 | - |
| Pfam | PF00022 | Actin | 2 | 383 | 3.5E-100 | IPR004000 |
| SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 147 | 383 | 7.92E-72 | IPR043129 |
| SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 2 | 154 | 1.62E-49 | IPR043129 |
| Gene3D | G3DSA:3.30.420.40 | - | 139 | 350 | 9.0E-137 | - |
| Gene3D | G3DSA:3.30.420.40 | - | 7 | 379 | 9.0E-137 | - |
| Gene3D | G3DSA:3.90.640.10 | Actin; Chain A, domain 4 | 181 | 272 | 9.0E-137 | - |
| SMART | SM00268 | actin_3 | 4 | 387 | 1.9E-192 | IPR004000 |
| PRINTS | PR00190 | Actin signature | 25 | 34 | 1.6E-27 | IPR004000 |
| PRINTS | PR00190 | Actin signature | 237 | 253 | 1.6E-27 | IPR004000 |
| PRINTS | PR00190 | Actin signature | 62 | 84 | 1.6E-27 | IPR004000 |
| PRINTS | PR00190 | Actin signature | 116 | 129 | 1.6E-27 | IPR004000 |
| PRINTS | PR00190 | Actin signature | 141 | 160 | 1.6E-27 | IPR004000 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G27000.1 | actin related protein 2. encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. its transcript level is down regulated by light and is expressed in very low levels in all organs examined. | 0 |
| RefSeq | XP_017229690.1 | PREDICTED: actin-related protein 2 [Daucus carota subsp. sativus] | 0 |
| Q9LSD6 | Actin-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=ARP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A162A2T3 | Actin-related protein 2 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000952 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.41358 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.547927 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.189646 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.016589 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 10.942053 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.161844 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.295154 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.003579 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 28.08403 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 29.253614 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 27.500896 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 33.805866 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 30.780611 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 29.292019 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 16.720465 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 15.322458 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 14.032806 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 21.45793 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 19.108185 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 17.455126 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 21.115402 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 20.541574 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 21.248264 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 21.01454 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 20.727722 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 23.615614 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 21.794233 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 21.251993 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 19.491909 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 9.979978 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 12.07384 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 10.874537 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 12.701699 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 12.874333 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.86599 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 10.993774 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.03848 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.530051 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.244394 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.46593 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 13.60041 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 19.441362 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 17.425764 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 19.43404 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 16.333178 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 21.02598 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 19.79657 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.781969 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 19.020279 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 18.593328 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17666 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25012 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026902 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g131060 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13650, Sbi_jg52252 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9596 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00024798, GOSA_00025983 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33442, Sgl38809 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000584, gene:ENSEOMG00000003242 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0020510, CQ.Regalona.r1.6BG0021590 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30025070 |
| Apiaceae | Apium graveolens | 1 | Ag7G01365 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G005270 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103698014 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1156.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G25176 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G27000.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004377m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g16120.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g067200.2N, BniB07g035720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0085 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0089 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g04430 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g08870 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6909 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.108 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024304 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G15147 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.1337, BH04.1331, CH04.1512 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0383050, gene-QOZ80_5BG0429920 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0336970.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_067052 |
| Poaceae | Oryza coarctata | 2 | Oco15G007130, Oco16G006910 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g28190.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G143900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0102971 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G006690, Chr17G006090 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G587900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG053130, gene_TRIDC3BG059770 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G369400.1, TraesCS3B02G401300.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb331340_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36466 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17953, Zma_g17976 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2318, evm.TU.LG17.1368 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g09080 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.805 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28717 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5761 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12409 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000061l.71 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008652 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14490, nbisL1-mrna-883 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-1611, nbisL1-mrna-8466, nbisL1-mrna-8467 |
| Salicaceae | Populus euphratica | 1 | populus_peu01269 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621200 |
| Solanaceae | Solanum chilense | 1 | SOLCI000003300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011945 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.21266_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1075 |
| Zosteraceae | Zostera marina | 3 | Zosma04g21700.v3.1, Zosma04g21730.v3.1, Zosma05g01330.v3.1 |