Basic Information
Locus ID:
Ag7G01345
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 147318589 | 147322206 | - | Ag7G01345 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 49,737.03 Da | 36.82 | 106.53 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 157 | 423 | 8.1E-47 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 130 | 425 | 2.02E-80 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 118 | 231 | 2.9E-29 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 232 | 430 | 1.8E-56 | - |
| SMART | SM00220 | serkin_6 | 156 | 426 | 2.6E-41 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 156 | 426 | 39.297478 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 277 | 289 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 162 | 184 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25220.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017239567.1 | PREDICTED: probable receptor-like protein kinase At1g80640 [Daucus carota subsp. sativus] | 0 |
| Q0V7T5 | Probable receptor-like protein kinase At1g80640 OS=Arabidopsis thaliana OX=3702 GN=At1g80640 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166HSU1 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003004 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.588525 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.873199 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.733126 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.679251 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 10.337889 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.978832 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.800332 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.423901 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 32.041256 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 30.279648 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 39.253834 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 27.554121 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 27.684032 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 25.741087 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 23.726837 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 29.637768 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 31.666759 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 16.815851 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 21.902205 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 11.335058 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.321147 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 16.887306 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 18.17963 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 18.898926 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 18.169418 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 21.526569 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 21.009798 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 15.924763 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 20.772272 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.137386 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.809139 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.207475 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.726453 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.349959 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.021148 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.603886 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.866261 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.358164 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 33.361446 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 18.645329 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.178583 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.684366 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.044861 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 8.84247 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 7.666922 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.351814 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 7.054354 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 22.684938 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 22.572031 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 23.310415 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg16536, jg18291, jg23341, jg25472 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_26260, gene_8199 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034811 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g031070 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11657, Sbi_jg21091, Sbi_jg22713, Sbi_jg46742 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16586, Seu_jg20912 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005109, GOSA_00018297 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl56008, Sgl60651, Sgl61201, Sgl62383, Sgl66930 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016588, gene:ENSEOMG00000020754 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0021780, CQ.Regalona.r1.2AG0023540 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30129650, pistato.v30250650 |
| Apiaceae | Apium graveolens | 3 | Ag4G00091, Ag5G00163, Ag7G01345 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G005540, COCNU_08G003860 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103703658, gene-LOC103706568, gene-LOC120104241 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.3340.V1.1, AsparagusV1_08.801.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri10G32678, Ftri16G10975, Ftri16G14156, Ftri18G10731 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G80640.1, AT2G25220.2, AT4G32000.2, AT5G11020.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10000655m.g.v1.0, Thhalv10013829m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp4g04340.v2.2, Sp5g35120.v2.2, Sp6g32470.v2.2 ... |
| Brassicaceae | Brassica nigra | 4 | BniB01g018060.2N, BniB02g050980.2N, BniB05g075430.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0376, Ceq04G2451 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0396, Cgl04G2677 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g07980 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g09050 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-698 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.794, evm.TU.LG07.1500 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00020172, Pov_00034508 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G04732, Lb1G04737 |
| Poaceae | Echinochloa crus-galli | 9 | AH06.2455, AH07.605, AH08.1087, BH06.2253, BH07.728 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0103970, gene-QOZ80_2BG0157270 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0568390.1, HORVU.MOREX.r3.7HG0743900.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_021073, gene-QYE76_032200, gene-QYE76_036640 |
| Poaceae | Oryza coarctata | 6 | Oco03G004210, Oco04G004170, Oco09G006570, Oco10G006810 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g08530.1, LOC_Os05g25540.1, LOC_Os08g18920.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G062000, gene-BS78_10G207700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0202291, Pt_Chr0401555, Pt_Chr0702843 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr05G008630, Chr06G033840, Chr0G007760, Chr10G019030 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G304700, Tel7E01G877000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG019990, gene_TRIDC6BG026000 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G145700.1, TraesCS6B02G174100.2 ... |
| Poaceae | Zea mays | 3 | Zm00001eb234200_P003, Zm00001eb275120_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-33578 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g12316, Zma_g15074, Zma_g22765, Zma_g30897 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.1542, evm.TU.LG07.1210, evm.TU.LG07.1819 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g12290 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.884, evm.TU.Scaffold_18_RagTag.271 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-13591, nbisL1-mrna-28265, nbisL1-mrna-28304 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-6173, nbisL1-mrna-7481 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-7771, nbisL1-mrna-9137 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000004l.196, evm.TU.utg000023l.240 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004252, Maker00018739 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14975, nbisL1-mrna-3747 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-17195, nbisL1-mrna-7824 |
| Salicaceae | Populus euphratica | 4 | populus_peu04077, populus_peu04713, populus_peu12968 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132615074, gene-LOC132633048 |
| Solanaceae | Solanum chilense | 2 | SOLCI003305600, SOLCI003652000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107013686, gene-LOC107018019 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.32971_chr09_+, gene_10170 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G1422, TC02G0604 |
| Zosteraceae | Zostera marina | 1 | Zosma03g01790.v3.1 |