Basic Information
Locus ID:
Ag7G01340
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 146641348 | 146643390 | + | Ag7G01340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.64 | 32,251.74 Da | 54.88 | 102.99 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 6 | 51 | 5.5E-4 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 98 | 234 | 1.33E-10 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 64 | 3.4E-8 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2 | 256 | 1.1E-19 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 4 | 51 | 8.649649 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G48880.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_017244176.1 | PREDICTED: F-box/LRR-repeat protein At3g48880-like [Daucus carota subsp. sativus] | 0 |
| Q9M2Z5 | F-box/LRR-repeat protein At3g48880 OS=Arabidopsis thaliana OX=3702 GN=At3g48880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A165XET5 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014540 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.326871 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.161654 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.352003 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.915566 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.756447 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.541448 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.1209 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.604314 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.259024 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.124359 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.086574 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.151234 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.176484 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.067826 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.092248 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.62269 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.146337 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.842241 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.221357 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.829365 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.202372 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.177469 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.31612 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.788712 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.617128 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.228903 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.933889 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.711647 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.569258 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg33990 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_14770, gene_14772, gene_7618 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027950 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30163150, pistato.v30163280 |
| Apiaceae | Apium graveolens | 12 | Ag10G01784, Ag3G00412, Ag3G00413, Ag3G01169, Ag4G01676 ... |
| Arecaceae | Cocos nucifera | 5 | COCNU_06G018500, COCNU_06G018510, COCNU_06G018520 ... |
| Arecaceae | Phoenix dactylifera | 9 | gene-LOC103696496, gene-LOC103709792, gene-LOC103709805 ... |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_03.603.V1.1, AsparagusV1_03.604.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G23199 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G48880.1, AT4G11580.1 |
| Brassicaceae | Eutrema salsugineum | 9 | Thhalv10005418m.g.v1.0, Thhalv10005421m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp2g23500.v2.2, Sp5g13170.v2.2, Sp5g15070.v2.2 ... |
| Brassicaceae | Brassica nigra | 12 | BniB01g019570.2N, BniB03g044870.2N, BniB05g048770.2N ... |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g02200 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g22980 |
| Nitrariaceae | Nitraria sibirica | 8 | evm.TU.LG01.2709, evm.TU.LG02.1995, evm.TU.LG02.1996 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040948 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.1229, AH01.1669, AH03.2205, BH01.1867, CH01.1973 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0112800, gene-QOZ80_2BG0166180 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0048040.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_011884, gene-QYE76_016614, gene-QYE76_063504 |
| Poaceae | Oryza coarctata | 5 | Oco05G018710, Oco06G019490, Oco19G007410, Oco20G007320 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os03g43770.1, LOC_Os08g04550.1, LOC_Os10g35920.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G146500, gene-BS78_04G076000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502836 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G009640, Chr04G024720, Chr06G029970, Chr07G023510 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G311200, Tel5E01G599800 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG026450, gene_TRIDC1BG031920 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G173500.3, TraesCS1B02G190900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb044180_P002 |
| Poaceae | Zoysia japonica | 8 | nbis-gene-12433, nbis-gene-13418, nbis-gene-20188 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g12709, Zma_g15200, Zma_g3217, Zma_g894 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g04740 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.1367, evm.TU.Scaffold_4_RagTag.132 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12666, nbisL1-mrna-29209 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-7237, nbisL1-mrna-9851 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12937, nbisL1-mrna-2149 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000008l.81, evm.TU.utg000008l.82 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000511, Maker00008977 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1065, nbisL1-mrna-2361 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20605, nbisL1-mrna-6270 |
| Salicaceae | Populus euphratica | 6 | populus_peu00840, populus_peu26417, populus_peu29244 ... |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132606495, gene-LOC132631880, gene-LOC132631886 ... |
| Solanaceae | Solanum chilense | 5 | SOLCI000293500, SOLCI002365900, SOLCI005115700 ... |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107012666, gene-LOC107012727, gene-LOC107014731 |