Basic Information
Locus ID:
Ag7G01295
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Peptidyl-prolyl cis-trans isomerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 136656320 | 136671940 | - | Ag7G01295 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.22 | 86,466.26 Da | 97.74 | 42.33 | -1.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00160 | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 19 | 169 | 1.3E-34 | IPR002130 |
| SUPERFAMILY | SSF50891 | Cyclophilin-like | 3 | 175 | 2.92E-53 | IPR029000 |
| Gene3D | G3DSA:2.40.100.10 | - | 1 | 178 | 2.9E-61 | IPR029000 |
| ProSiteProfiles | PS50072 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 9 | 170 | 30.960546 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 134 | 149 | 5.2E-17 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 106 | 121 | 5.2E-17 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 26 | 41 | 5.2E-17 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 63 | 75 | 5.2E-17 | IPR002130 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 570 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 617 | 643 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 523 | 537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 688 | 712 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 760 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 687 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 474 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32420.1 | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein. | 0 |
| RefSeq | XP_017228534.1 | PREDICTED: peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q8RWY7 | Peptidyl-prolyl cis-trans isomerase CYP95 OS=Arabidopsis thaliana OX=3702 GN=CYP95 PE=1 SV=2 | 0 | |
| TrEMBL | A0A166HTQ1 | PPIase cyclophilin-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003043 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 38.382557 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 27.997494 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 26.846996 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 27.837273 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 29.038361 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 23.016216 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 21.015053 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 14.12657 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 54.635334 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 53.717113 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 57.637566 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 60.400845 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 53.327976 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 50.791847 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 16.190313 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 22.478495 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 23.162477 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 23.084833 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 21.436459 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 17.214508 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 24.085546 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 25.787905 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 22.823313 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 28.482668 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 22.84944 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 31.290955 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 25.953924 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 23.302969 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 27.112898 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.507759 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 21.637764 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 15.277733 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 15.10679 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 23.184444 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 15.789581 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 13.734525 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 10.322979 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 8.859679 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 53.082066 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 25.900129 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 17.597578 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 19.613188 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 19.667349 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 32.960659 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 30.117447 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 22.954613 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 29.316872 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 44.534657 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 41.869884 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 37.089413 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology