Basic Information
Locus ID:
Ag7G01289
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
SAE2
Description:
SUMO-activating enzyme
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 134617807 | 134625329 | - | Ag7G01289 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 71,228.04 Da | 44.15 | 91.23 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01489 | Uba2_SUMO | 18 | 439 | 0.0 | - |
| Pfam | PF00899 | ThiF family | 12 | 412 | 4.3E-71 | IPR000594 |
| Pfam | PF10585 | Ubiquitin-activating enzyme active site | 329 | 373 | 3.7E-5 | IPR019572 |
| Pfam | PF14732 | Ubiquitin/SUMO-activating enzyme ubiquitin-like domain | 446 | 538 | 4.8E-21 | IPR028077 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 12 | 488 | 3.66E-100 | IPR035985 |
| Gene3D | G3DSA:3.50.50.80 | - | 6 | 112 | 2.3E-32 | IPR042449 |
| Gene3D | G3DSA:3.10.290.20 | - | 440 | 626 | 2.1E-25 | - |
| Gene3D | G3DSA:1.10.10.520 | Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 | 167 | 378 | 2.8E-51 | IPR023318 |
| PIRSF | PIRSF039133 | SUMO_E1B | 2 | 642 | 5.1E-181 | IPR030661 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 227 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21470.1 | SUMO-activating enzyme 2. Encodes one of the two subunits of the SUMO activation enzyme required during sumolation. Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein. | 0 |
| RefSeq | XP_017230481.1 | PREDICTED: SUMO-activating enzyme subunit 2 [Daucus carota subsp. sativus] | 0 |
| Q9SJT1 | SUMO-activating enzyme subunit 2 OS=Arabidopsis thaliana OX=3702 GN=SAE2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166ICX6 | SUMO-activating enzyme subunit OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003656 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 32.255547 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 21.619143 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 18.410257 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 20.188768 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 19.442801 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 23.578508 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 20.547026 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 21.926596 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 39.078533 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 36.977085 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 38.781944 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 40.690189 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 40.990505 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 36.385651 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 10.125731 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.031949 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.853088 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.537426 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.414019 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 16.851002 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 20.41757 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 19.928921 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 20.073715 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 20.465559 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 20.131542 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.874142 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 16.498798 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.854444 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 16.045454 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 9.597718 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.285688 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 10.163771 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 19.558306 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 19.408213 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 22.080299 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 13.126921 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 10.077117 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 12.281825 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 20.917543 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 15.840164 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 13.392 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 38.514843 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 27.003036 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 22.982733 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 20.506302 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 33.578156 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 18.011204 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 29.984703 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 33.314976 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 31.293055 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28785 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21673 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010197 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g216990 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12395, Sbi_jg45940 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20278 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022483 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl56036, Sgl56166, Sgl61370, Sgl61607 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014533, gene:ENSEOMG00000036498 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0007270, CQ.Regalona.r1.9AG0017290 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30115240 |
| Apiaceae | Apium graveolens | 2 | Ag7G01288, Ag7G01289 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G017220, COCNU_16G001210 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697019, gene-LOC103712329 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1814.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G22482 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G21470.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000089m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g00630.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g022650.2N, BniB02g017260.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1550 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1648 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g12340 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0164s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g14280 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.1435, evm.TU.LG08.182 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010217 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G17346, Lb7G34921 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3531, BH03.3751, CH03.3964 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0574940, gene-QOZ80_7BG0606290 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0129980.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_040026 |
| Poaceae | Oryza coarctata | 2 | Oco13G011320, Oco14G012080 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g39780.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G332300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0304650, Pt_Chr0304671 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G003250, Chr24G011380, Chr27G013980, Chr28G010580 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G358400, Tel5E01G422600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG024630, gene_TRIDC2BG028420 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G192200.1, TraesCS2B02G214100.3 ... |
| Poaceae | Zea mays | 2 | Zm00001eb108060_P001, Zm00001eb325940_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32802, nbis-gene-547 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5459, Zma_g6742 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1787, evm.TU.LG22.61 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g03680 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.2245 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14072 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3304 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.116 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016828 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4676 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14165, nbisL1-mrna-25198 |
| Salicaceae | Populus euphratica | 2 | populus_peu08835, populus_peu36517 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599200 |
| Solanaceae | Solanum chilense | 1 | SOLCI007335900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008183 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.11473_chr02_-, gene_16843 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0436 |
| Zosteraceae | Zostera marina | 2 | Zosma04g00220.v3.1, Zosma06g23720.v3.1 |