Basic Information
Locus ID:
Ag7G01288
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
SAE2
Description:
SUMO-activating enzyme subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 134048575 | 134055791 | - | Ag7G01288 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 72,246.35 Da | 41.22 | 92.97 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01489 | Uba2_SUMO | 15 | 436 | 0.0 | - |
| Pfam | PF00899 | ThiF family | 7 | 413 | 1.9E-70 | IPR000594 |
| Pfam | PF10585 | Ubiquitin-activating enzyme active site | 330 | 370 | 2.9E-5 | IPR019572 |
| Pfam | PF14732 | Ubiquitin/SUMO-activating enzyme ubiquitin-like domain | 443 | 535 | 5.4E-21 | IPR028077 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 8 | 485 | 7.59E-101 | IPR035985 |
| Gene3D | G3DSA:3.10.290.20 | - | 437 | 588 | 3.6E-26 | - |
| Gene3D | G3DSA:1.10.10.520 | Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 | 164 | 375 | 5.2E-51 | IPR023318 |
| Gene3D | G3DSA:3.50.50.80 | - | 2 | 109 | 2.6E-32 | IPR042449 |
| PIRSF | PIRSF039133 | SUMO_E1B | 2 | 646 | 3.4E-180 | IPR030661 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 600 | 628 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 603 | 618 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21470.1 | SUMO-activating enzyme 2. Encodes one of the two subunits of the SUMO activation enzyme required during sumolation. Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein. | 0 |
| RefSeq | XP_017230481.1 | PREDICTED: SUMO-activating enzyme subunit 2 [Daucus carota subsp. sativus] | 0 |
| Q9SJT1 | SUMO-activating enzyme subunit 2 OS=Arabidopsis thaliana OX=3702 GN=SAE2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166ICX6 | SUMO-activating enzyme subunit OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003656 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 13.163733 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 9.838451 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.265291 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.331212 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.888081 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 17.154745 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.752973 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.309494 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 30.364628 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 31.737846 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 30.974258 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 32.727333 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 30.944586 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 29.858522 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.342775 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.658566 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.43925 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.450378 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 8.516251 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.572581 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.908219 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.766884 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.773269 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 13.420363 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.645673 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.139674 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.842992 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.996178 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.354918 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.283946 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.755282 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.106877 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 14.804694 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 12.502351 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 13.791326 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 7.629401 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.238804 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.82542 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.699997 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.961226 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.901765 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 13.664256 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.347907 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 14.640324 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 16.461914 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 16.665359 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 17.948557 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 19.987165 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 19.266048 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 21.621592 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28785 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21673 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010197 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g216990 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12395, Sbi_jg45940 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20278 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022483 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl56036, Sgl56166, Sgl61370, Sgl61607 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014533, gene:ENSEOMG00000036498 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0007270, CQ.Regalona.r1.9AG0017290 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30115240 |
| Apiaceae | Apium graveolens | 2 | Ag7G01288, Ag7G01289 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G017220, COCNU_16G001210 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697019, gene-LOC103712329 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1814.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G22482 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G21470.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000089m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g00630.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g022650.2N, BniB02g017260.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1550 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1648 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g12340 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0164s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g14280 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.1435, evm.TU.LG08.182 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010217 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G17346, Lb7G34921 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3531, BH03.3751, CH03.3964 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0574940, gene-QOZ80_7BG0606290 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0129980.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_040026 |
| Poaceae | Oryza coarctata | 2 | Oco13G011320, Oco14G012080 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g39780.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G332300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0304650, Pt_Chr0304671 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G003250, Chr24G011380, Chr27G013980, Chr28G010580 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G358400, Tel5E01G422600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG024630, gene_TRIDC2BG028420 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G192200.1, TraesCS2B02G214100.3 ... |
| Poaceae | Zea mays | 2 | Zm00001eb108060_P001, Zm00001eb325940_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32802, nbis-gene-547 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5459, Zma_g6742 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1787, evm.TU.LG22.61 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g03680 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.2245 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14072 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3304 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.116 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016828 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4676 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14165, nbisL1-mrna-25198 |
| Salicaceae | Populus euphratica | 2 | populus_peu08835, populus_peu36517 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599200 |
| Solanaceae | Solanum chilense | 1 | SOLCI007335900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008183 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.11473_chr02_-, gene_16843 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0436 |
| Zosteraceae | Zostera marina | 2 | Zosma04g00220.v3.1, Zosma06g23720.v3.1 |