Basic Information
Locus ID:
Ag7G01278
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
SMG1
Description:
Belongs to the PI3 PI4-kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 130599447 | 130615181 | + | Ag7G01278 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 418,529.09 Da | 46.05 | 99.91 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05170 | PIKKc_SMG1 | 1994 | 2299 | 2.03591E-172 | IPR039414 |
| Pfam | PF02260 | FATC domain | 3709 | 3737 | 1.4E-14 | IPR003152 |
| Pfam | PF00454 | Phosphatidylinositol 3- and 4-kinase | 2023 | 2298 | 2.3E-43 | IPR000403 |
| Pfam | PF15785 | Serine/threonine-protein kinase smg-1 | 674 | 1185 | 3.7E-41 | IPR031559 |
| SUPERFAMILY | SSF48371 | ARM repeat | 52 | 745 | 4.71E-13 | IPR016024 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1989 | 2301 | 6.12E-68 | IPR011009 |
| Gene3D | G3DSA:3.30.1010.10 | - | 1946 | 2081 | 2.8E-21 | - |
| Gene3D | G3DSA:1.10.1070.11 | - | 2158 | 2321 | 4.4E-40 | IPR036940 |
| SMART | SM01343 | FATC_2 | 3706 | 3738 | 7.6E-15 | IPR003152 |
| SMART | SM00146 | pi3k_hr1_6 | 2024 | 2360 | 4.2E-44 | IPR000403 |
| ProSiteProfiles | PS50290 | Phosphatidylinositol 3- and 4-kinases family profile. | 2023 | 2292 | 37.457699 | IPR000403 |
| ProSiteProfiles | PS51189 | FAT domain profile. | 1164 | 1782 | 10.467582 | IPR014009 |
| ProSiteProfiles | PS51190 | FATC domain profile. | 3706 | 3738 | 16.358133 | IPR003152 |
| ProSitePatterns | PS00916 | Phosphatidylinositol 3- and 4-kinases signature 2. | 2192 | 2212 | - | IPR018936 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3603 | 3638 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3603 | 3619 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 50 | - | - |
| Coils | Coil | Coil | 455 | 482 | - | - |
| Coils | Coil | Coil | 3301 | 3328 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50030.2 | target of rapamycin. Related to TOR proteins from yeast and mammals, regulators of cell growth in response to nutrient availability. TOR proteins belong to the family of phosphatidylinositol 3-kinase and are targets of the antiproliferative drug rapamycin. AtTOR binds the yeast FKBP12 protein in the presence of Rapamycin, is involved in embryogenesis and is expressed in embryos, endosperm and meristems. | 0 |
| RefSeq | XP_017214803.1 | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC108192816 [Daucus carota subsp. sativus] | 0 |
| C5J7W8 | Serine/threonine-protein kinase SMG1 OS=Danio rerio OX=7955 GN=smg1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2R6RC04 | non-specific serine/threonine protein kinase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc07358 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 13.996624 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.176483 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.97445 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.575191 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 13.716413 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 12.917787 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.229457 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.713944 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.829277 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 10.287846 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.369422 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 12.765212 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 17.961878 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.829288 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.400045 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.691786 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.312527 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.280496 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.578402 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.285904 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.622692 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.543684 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.939265 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.051465 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.282435 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 9.715753 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.397626 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.33439 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.568519 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.4111 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.09167 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.992895 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.1019 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.496088 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.010746 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.99771 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.35342 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.394199 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.244853 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.685039 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.071354 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 5.924376 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 8.671849 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 18.762903 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 16.902367 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.560624 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 14.727283 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 4.214196 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.762653 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.161216 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28717 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26387 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010337 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g218300 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12513, Sbi_jg45801 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20163 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022393 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl00027, Sgl05097 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000038715 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9AG0016060 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30113580, pistato.v30278720 |
| Apiaceae | Apium graveolens | 1 | Ag7G01278 |
| Arecaceae | Cocos nucifera | 1 | scaffold002237G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707474 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_06.100.V1.1, AsparagusV1_06.99.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G27127 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G35075.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022517m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g29240.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g063090.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0024 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0029 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g07740 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0207s00006.v1.0, Dusal.0207s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g10850 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.71 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00007563, Pov_00029448, Pov_00029449 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17189 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.811, CH01.823, Contig309.156 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0340780.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062025 |
| Poaceae | Oryza coarctata | 1 | Oco06G023900 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g52794.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G087800 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0105996, Pt_Chr0107073, Pt_Chr0107513, Pt_Chr0108215 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G005770, Chr12G031570 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G111900 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG038710-17776, gene_TRIDC4AG038710-72141 ... |
| Poaceae | Triticum aestivum | 1 | TraesCS4B02G069200.1 |
| Poaceae | Zea mays | 1 | Zm00001eb056540_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15011, nbis-gene-15012 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g519 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG08.1867 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g14050 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.2146 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5955 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16929 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3390 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.180 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017325 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4741 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14076 |
| Salicaceae | Populus euphratica | 2 | populus_peu08945, populus_peu37687 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599114 |
| Solanaceae | Solanum chilense | 1 | SOLCI002767800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002510 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17751 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1083 |
| Zosteraceae | Zostera marina | 1 | Zosma05g30820.v3.1 |