Basic Information
Locus ID:
Ag7G01256
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 122018763 | 122032383 | + | Ag7G01256 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 34,004.34 Da | 41.99 | 76.92 | -1.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF09728 | Myosin-like coiled-coil protein | 15 | 273 | 2.5E-68 | IPR026183 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 289 | - | - |
| Coils | Coil | Coil | 109 | 129 | - | - |
| Coils | Coil | Coil | 38 | 72 | - | - |
| Coils | Coil | Coil | 204 | 231 | - | - |
| Coils | Coil | Coil | 239 | 273 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50840.1 | 0 | |
| RefSeq | XP_017249345.1 | PREDICTED: alpha-taxilin [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A6P6AKF4 | beta-taxilin-like isoform X2 OS=Durio zibethinus OX=66656 GN=LOC111310299 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 50.148933 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 40.564075 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 42.076054 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 42.157459 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 43.178123 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 57.240509 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 40.59053 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 35.21109 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 46.646725 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 50.487522 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 57.219139 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 64.812309 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 54.243576 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 50.193695 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 53.413929 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 49.5084 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 60.257195 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 35.413197 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 43.847271 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 33.767857 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 35.683983 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 65.291435 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 62.643623 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 69.845619 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 74.483421 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 47.03907 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 42.827591 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 49.854328 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 54.009563 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.445152 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 22.25593 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 13.256776 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 14.022364 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 22.160463 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 16.196377 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 16.97497 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 12.347791 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 13.070929 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 46.28508 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 30.948647 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 24.214394 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 34.713795 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 57.199734 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 115.080498 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 107.828781 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 45.213757 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 101.430832 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 73.111298 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 76.0028 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 86.521446 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2754 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13011 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah034029, Ah034031 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g036230 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20718, Sbi_jg23037 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16910 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00009268, GOSA_00009269 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl62081, Sgl62094, Sgl63954, Sgl66641, Sgl66645, Sgl68444 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018403, gene:ENSEOMG00000022668 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0012100, CQ.Regalona.r1.2BG0013570 |
| Apiaceae | Apium graveolens | 1 | Ag7G01256 |
| Arecaceae | Cocos nucifera | 3 | COCNU_04G014290, COCNU_12G006750, COCNU_16G006780 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103706666, gene-LOC103709830, gene-LOC113463458 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.989.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G03920 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G50840.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013687m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g12980.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g060480.2N, BniB08g018380.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0642 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0654 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g15650 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.1005s00002.v1.0, Dusal.1005s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g32770 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1421 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012698 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G12480, Lb6G30463 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0244090, gene-QOZ80_3BG0284050 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0385190.1, HORVU.MOREX.r3.4HG0385200.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_008329, gene-QYE76_068776 |
| Poaceae | Oryza coarctata | 2 | Oco05G010490, Oco06G010710 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g17930.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G390900 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G031860, Chr04G008560, Chr07G003110, Chr12G007770 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G348300 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG058220, gene_TRIDC4AG014890 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS2A02G402800.1, TraesCS4A02G108300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb013240_P002, Zm00001eb397090_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-1977, nbis-gene-3636 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1457, Zma_g3850 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.849, evm.TU.LG05.2089, evm.TU.LG07.120 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g36290 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1644 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-31679 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9130 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4457 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.906 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000293 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2145 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9532 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616179 |
| Solanaceae | Solanum chilense | 1 | SOLCI006800000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015538 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.32594_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1291 |
| Zosteraceae | Zostera marina | 1 | Zosma01g18540.v3.1 |