Basic Information
Locus ID:
Ag7G01249
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Periodic tryptophan protein 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 121169678 | 121175751 | - | Ag7G01249 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.58 | 53,794.37 Da | 36.17 | 81.02 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 442 | 468 | 0.21 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 256 | 287 | 9.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 386 | 423 | 0.0039 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 201 | 469 | 3.33E-48 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 129 | 329 | 6.7E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 330 | 486 | 4.6E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 334 | 373 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 383 | 423 | 6.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 428 | 468 | 0.034 | IPR001680 |
| SMART | SM00320 | WD40_4 | 290 | 330 | 0.016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 246 | 287 | 2.3E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 390 | 428 | 11.919224 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 254 | 292 | 10.838322 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 254 | 296 | 13.783434 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 390 | 432 | 14.652308 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 274 | 288 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 410 | 424 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 274 | 288 | 9.8E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 410 | 424 | 9.8E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 205 | 219 | 9.8E-8 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 60 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G18905.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017254578.1 | PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Daucus carota subsp. sativus] | 0 |
| Q9P775 | Uncharacterized WD repeat-containing protein C17D11.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC1711.16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164UUS9 | ANAPC4_WD40 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023249 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 50.011639 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 36.540195 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 36.421627 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 36.67664 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 41.306702 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 50.477646 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 48.636616 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 47.084568 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 41.161133 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 44.863285 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 47.922218 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 49.83527 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 46.750336 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 39.691181 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 10.52905 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 16.102589 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 23.376165 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 22.474281 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 19.170729 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 24.502842 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 26.511366 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 32.142673 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 40.569336 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 35.505745 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 32.131622 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 28.853859 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 23.965025 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 26.53142 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 25.872877 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 17.336924 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 31.200634 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 27.604103 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 31.224283 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 23.927025 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 33.424545 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 19.444675 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 24.702053 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 18.898022 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 20.170992 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 11.845046 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.80688 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 46.581318 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 36.25251 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 125.114807 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 82.047173 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 56.39502 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 55.579796 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 43.286732 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 37.720615 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 33.132065 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16127, jg37868 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5616 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033670 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g015460 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15735, Sbi_jg56527 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13751 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016933 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl34098, Sgl34327, Sgl39728 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019212, gene:ENSEOMG00000021516 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2BG0010980, CQ.Regalona.r1.7AG0013220 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30165830, pistato.v30203190, pistato.v30275770 |
| Apiaceae | Apium graveolens | 1 | Ag7G01249 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G010680 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703761 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2696.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G07074, Ftri7G19854 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT4G18900.1, AT4G18905.2, AT4G35370.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10024971m.g.v1.0, Thhalv10027098m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp7g17610.v2.2, Sp7g33160.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g071650.2N, BniB05g003020.2N, BniB05g017470.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2198 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2397 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g16160 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0100s00022.v1.0, Dusal.0100s00023.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g01600 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10693 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.1020 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008070 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G31571, Lb6G31572 |
| Poaceae | Echinochloa crus-galli | 7 | AH02.4358, AH05.585, BH02.4394, BH03.4050, CH02.4439 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0150560, gene-QOZ80_2BG0205990 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0093090.1, HORVU.MOREX.r3.3HG0311440.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_057455 |
| Poaceae | Oryza coarctata | 2 | Oco01G028780, Oco02G029880 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g69970.1, LOC_Os06g30680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G386400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503349, Pt_Chr0600565 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr0G000680, Chr0G022140, Chr10G006830, Chr11G012520 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G715900, Tel3E01G690600 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC1AG062640, gene_TRIDC1BG071820 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1A02G425700.1, TraesCS1B02G459900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb142980_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-53216, nbis-gene-53217 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29958 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.36, evm.TU.LG24.263 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g35990, gene.Posoc04g00010 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.201, evm.TU.Scaffold_6_RagTag.2053 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-417, nbisL1-mrna-452, nbisL1-mrna-573 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10428, nbisL1-mrna-11991 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5952 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1252, evm.TU.utg000019l.1116 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007104, Maker00012740 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15620, nbisL1-mrna-6515 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3052 |
| Salicaceae | Populus euphratica | 2 | populus_peu23630, populus_peu28853 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132612624, gene-LOC132616697 |
| Solanaceae | Solanum chilense | 1 | SOLCI000566400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018001 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4994 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G2236, TC10G2239 |
| Zosteraceae | Zostera marina | 1 | Zosma03g35910.v3.1 |