Basic Information
Locus ID:
Ag7G01152
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Peroxisome biogenesis factor 10
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 105889788 | 105895289 | + | Ag7G01152 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.51 | 43,304.74 Da | 49.36 | 86.13 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16527 | RING-HC_PEX10 | 338 | 377 | 3.35377E-27 | - |
| Pfam | PF04757 | Pex2 / Pex12 amino terminal region | 44 | 275 | 2.2E-44 | IPR006845 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 337 | 381 | 7.2E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 338 | 382 | 1.48E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 313 | 390 | 7.6E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 339 | 376 | 1.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 339 | 377 | 13.640012 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 354 | 363 | - | IPR017907 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G26350.1 | peroxin 10. Zinc-binding peroxisomal integral membrane protein (PEX10). Inserted directly from the cytosol into peroxisomes and is involved in importing proteins into the peroxisome. Required for embryogenesis. | 0 |
| RefSeq | XP_017252144.1 | PREDICTED: peroxisome biogenesis factor 10 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9SYU4 | Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana OX=3702 GN=PEX10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P6TN89 | peroxisome biogenesis factor 10-like OS=Coffea arabica OX=13443 GN=LOC113702970 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.266356 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.032819 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.7685 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.285223 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 10.030351 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 12.706388 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.149917 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.697184 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 17.437271 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 19.06282 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 20.031151 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.848614 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 16.900068 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 15.325967 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.315597 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.582436 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.477466 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.318277 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.556178 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.647001 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.264612 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.387836 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 9.768032 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.851736 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.740421 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.207502 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.835088 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.160805 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.706819 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.567835 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 8.909721 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.582794 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 12.339946 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 10.432835 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 14.644427 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.698534 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.639403 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.013667 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.561096 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.458209 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.960517 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.986284 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 9.051415 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 8.987478 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 8.362942 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 13.183054 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 8.909508 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.334332 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.226617 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 18.991528 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23977, jg36624 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13125 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034456 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g033990 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20389, Sbi_jg23397 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17172 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009058 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63615, Sgl68106 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018644, gene:ENSEOMG00000018743 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2AG0013640, CQ.Regalona.r1.2BG0015740 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30261020 |
| Apiaceae | Apium graveolens | 1 | Ag7G01152 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G001300, COCNU_05G008860 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712719 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1214.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G10655 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G26350.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002014m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g07000.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g024690.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2136 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2280 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g01270 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0705s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g25700 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.680 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013405 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05058 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3664, CH03.4109, CH03.4191 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0576590, gene-QOZ80_7BG0608040 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0126010.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_039750 |
| Poaceae | Oryza coarctata | 2 | Oco13G012380, Oco14G013120 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g41800.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G346600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0306247, Pt_Chr0306300 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G015490, Chr28G011390 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G335400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG021750, gene_TRIDC2BG026280 |
| Poaceae | Triticum aestivum | 2 | TraesCS2A02G171700.1, TraesCS2D02G179200.1 |
| Poaceae | Zea mays | 1 | Zm00001eb108960_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-32916 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5531 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.2249, evm.TU.LG07.1320 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g04120 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.764 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-30275, nbisL1-mrna-30287 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19719 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16137 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.447 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015423 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4366 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15041 |
| Salicaceae | Populus euphratica | 1 | populus_peu12590 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635970 |
| Solanaceae | Solanum chilense | 2 | SOLCI003785300, SOLCI003986300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015722 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.15519_chr06_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1455 |
| Zosteraceae | Zostera marina | 1 | Zosma03g25550.v3.1 |