Basic Information
Locus ID:
Ag7G01108
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Notchless protein homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 98118979 | 98129335 | + | Ag7G01108 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 53,899.85 Da | 31.82 | 82.37 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 112 | 442 | 7.90823E-82 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 111 | 148 | 1.4E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 406 | 442 | 5.1E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 450 | 483 | 1.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 368 | 400 | 4.3E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 154 | 190 | 7.2E-6 | IPR001680 |
| Pfam | PF08154 | NLE (NUC135) domain | 30 | 83 | 5.6E-10 | IPR012972 |
| Pfam | PF00400 | WD domain, G-beta repeat | 200 | 238 | 0.0025 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 244 | 278 | 5.3E-5 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 113 | 483 | 7.85E-76 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 108 | 484 | 4.4E-124 | IPR015943 |
| SMART | SM00320 | WD40_4 | 194 | 238 | 0.13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 361 | 400 | 6.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 445 | 484 | 5.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 151 | 190 | 1.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 403 | 442 | 1.2E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 109 | 148 | 2.3E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 241 | 279 | 8.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 282 | 357 | 0.029 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 116 | 157 | 18.629074 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 368 | 400 | 12.472858 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 248 | 284 | 9.625601 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 158 | 199 | 11.878597 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 248 | 288 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 158 | 195 | 9.441055 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 410 | 451 | 17.158672 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 201 | 239 | 10.007177 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 116 | 151 | 14.845573 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 452 | 485 | 15.153581 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 368 | 400 | 15.120162 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 410 | 445 | 13.632853 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 452 | 485 | 13.817396 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 266 | 280 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 135 | 149 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 429 | 443 | - | IPR019775 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 410 | 426 | 2.2E-7 | IPR001632 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 429 | 443 | 2.2E-7 | IPR001632 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 466 | 483 | 2.2E-7 | IPR001632 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 135 | 149 | 1.2E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 429 | 443 | 1.2E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 266 | 280 | 1.2E-8 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52820.1 | WD-40 repeat family protein / notchless protein, putative. | 0 |
| RefSeq | XP_017230477.1 | PREDICTED: notchless protein homolog [Daucus carota subsp. sativus] | 0 |
| Q9FLX9 | Notchless protein homolog OS=Arabidopsis thaliana OX=3702 GN=NLE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166IGD2 | NLE domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003761 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 27.015589 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 19.611193 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 13.450123 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 17.154486 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 18.541832 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 13.615154 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.560719 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.926612 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 26.062683 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 24.90836 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 27.784342 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 30.178104 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 28.3503 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 24.678604 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.836602 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.477927 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 12.632838 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.763737 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 14.302369 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 17.389446 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 18.86834 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.729772 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 17.571934 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 20.866285 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 18.349237 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 17.095978 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 16.286417 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 16.677174 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 19.022081 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.970452 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.000681 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 10.071671 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 20.464518 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 16.339487 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 18.528416 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 10.200275 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 7.442936 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.381078 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.84971 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.496506 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.19552 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 12.634122 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.987873 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 22.53314 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 17.440968 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 24.463629 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 14.667355 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 27.909727 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 26.705153 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 23.636961 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17112 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16410, gene_8297 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035696 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g071860 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19609, Sbi_jg21740 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16003 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008624 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl63023, Sgl63026, Sgl67650, Sgl67651 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016732, gene:ENSEOMG00000020069 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0017160, CQ.Regalona.r1.7BG0026070 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30230010 |
| Apiaceae | Apium graveolens | 1 | Ag7G01108 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G007830 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705641 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2041.V1.1, AsparagusV1_05.975.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G24042 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G52820.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013442m.g.v1.0, Thhalv10025051m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g14980.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g030590.2N, BniB02g054270.2N, BniB05g032410.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G0778, Ceq05G0786 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G0786, Cgl05G0790 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g03720 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0107s00002.v1.0, Dusal.1474s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g24660 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.84 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00024641, Pov_00028634 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G06796, Lb3G19306 |
| Poaceae | Echinochloa crus-galli | 3 | BH05.1230, CH01.2726, CH05.1477 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0570470, gene-QOZ80_7BG0602240 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0095090.1 |
| Poaceae | Oryza coarctata | 2 | Oco19G000100, Oco20G000140 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g01540.1, LOC_Os11g38170.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G260600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0505934 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G005160, Chr24G009180, Chr27G012100, Chr28G008590 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G580900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG065070, gene_TRIDC1BG074310 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G443600.1, TraesCS1B02G478100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb297740_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-806 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6582 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.1108 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g18210 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.612 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10742 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6111 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10228 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.428 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013862 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10242 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7251 |
| Salicaceae | Populus euphratica | 2 | populus_peu01891, populus_peu35922 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610031 |
| Solanaceae | Solanum chilense | 1 | SOLCI007105700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012332 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13740_chr05_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3919 |
| Zosteraceae | Zostera marina | 1 | Zosma03g24200.v3.1 |