Basic Information
Locus ID:
Ag7G01102
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
DUF1087
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 95430084 | 95447593 | - | Ag7G01102 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 263,836.69 Da | 50.44 | 73.39 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1097 | 1224 | 4.92628E-52 | - |
| CDD | cd15532 | PHD2_CHD_II | 76 | 117 | 3.39556E-22 | - |
| CDD | cd11660 | SANT_TRF | 1821 | 1865 | 2.31502E-7 | - |
| CDD | cd18659 | CD2_tandem | 688 | 741 | 1.73611E-15 | - |
| CDD | cd18660 | CD1_tandem | 606 | 673 | 2.38285E-14 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 691 | 741 | 7.8E-9 | IPR023780 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1103 | 1213 | 3.6E-17 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 799 | 1076 | 2.9E-61 | IPR000330 |
| Pfam | PF00628 | PHD-finger | 76 | 119 | 3.3E-9 | IPR019787 |
| Pfam | PF06465 | Domain of Unknown Function (DUF1087) | 1398 | 1435 | 1.4E-8 | IPR009463 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 1817 | 1867 | 4.63E-7 | IPR009057 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 680 | 728 | 8.05E-9 | IPR016197 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 70 | 123 | 2.44E-15 | IPR011011 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 605 | 677 | 2.93E-10 | IPR016197 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 772 | 1007 | 8.57E-57 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1009 | 1266 | 2.99E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1017 | 1244 | 5.9E-184 | IPR027417 |
| Gene3D | G3DSA:1.10.10.60 | - | 1797 | 1888 | 5.2E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 119 | 9.3E-19 | IPR013083 |
| Gene3D | G3DSA:2.40.50.40 | - | 580 | 694 | 6.7E-12 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 774 | 1016 | 5.9E-184 | IPR038718 |
| Gene3D | G3DSA:2.40.50.40 | - | 695 | 741 | 5.2E-9 | - |
| SMART | SM00490 | helicmild6 | 1128 | 1213 | 1.3E-21 | IPR001650 |
| SMART | SM00249 | PHD_3 | 75 | 118 | 4.1E-13 | IPR001965 |
| SMART | SM00487 | ultradead3 | 779 | 983 | 3.1E-39 | IPR014001 |
| SMART | SM00298 | chromo_7 | 606 | 677 | 2.5E-7 | IPR000953 |
| SMART | SM00298 | chromo_7 | 687 | 744 | 4.4E-5 | IPR000953 |
| SMART | SM01147 | DUF1087_2 | 1381 | 1441 | 2.3E-16 | IPR009463 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1102 | 1261 | 17.121574 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 795 | 972 | 23.417116 | IPR014001 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 619 | 675 | 10.077801 | IPR000953 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 1813 | 1869 | 6.167592 | IPR001005 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 689 | 741 | 8.919401 | IPR000953 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 73 | 120 | 9.9795 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 76 | 117 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 559 | 583 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1597 | 1639 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2334 | 2367 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 331 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2255 | 2367 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1421 | 1485 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1274 | 1298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2267 | 2281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2122 | 2157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1453 | 1469 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1277 | 1298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G44800.1 | chromatin remodeling 4. | 0 |
| RefSeq | XP_017225258.1 | PREDICTED: protein CHROMATIN REMODELING 4-like isoform X2 [Daucus carota subsp. sativus] | 0 |
| F4KBP5 | Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana OX=3702 GN=CHR4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166IGS6 | Protein PICKLE RELATED 1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003772 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.138784 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.10382 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.092157 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.568634 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.302163 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 15.381398 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.280606 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 17.09704 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 15.850274 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.86917 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 16.698105 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 14.019919 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 16.371782 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.548042 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.81299 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.326182 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.278055 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.661995 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.08918 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.969651 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.62189 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.048658 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 9.29854 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.157561 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.336663 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.104097 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.953353 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.471874 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.058533 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.585806 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.851351 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.865346 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.527318 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.276109 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.532495 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.480062 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.636167 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.823847 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.957896 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.939226 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.460982 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 16.420181 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 12.203426 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 12.128396 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 11.723957 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 13.239288 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 12.767743 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.305848 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.031436 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.321193 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20920 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_6170, gene_6171 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030129 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g163270 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16043, Sbi_jg56949 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24706 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013711 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl71828, Sgl71829, Sgl75394 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000007979, gene:ENSEOMG00000036380 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0016160, CQ.Regalona.r1.7BG0020010 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30079060 |
| Apiaceae | Apium graveolens | 3 | Ag6G01210, Ag6G01213, Ag7G01102 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G012720, scaffold000767G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711432, gene-LOC103713520 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1054.V1.1, AsparagusV1_03.1055.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G28642 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G44800.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000738m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g09650.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g016800.2N, BniB08g006390.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1410 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1572 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno13g03500, gene.Cymno13g03520 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0280s00012.v1.0, Dusal.0357s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g20990 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 5 | nbisL1-mrna-3062, nbisL1-mrna-3063, nbisL1-mrna-3064 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.376 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012913 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G24837, Lb4G24843, Lb4G24844 |
| Poaceae | Echinochloa crus-galli | 5 | AH03.3062, BH03.3235, BH03.3237, CH03.3433, Contig2801.2 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0143700.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041223 |
| Poaceae | Oryza coarctata | 2 | Oco13G007840, Oco14G008360 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G284100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304117 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G006020, Chr24G007750, Chr27G011240, Chr28G007090 |
| Poaceae | Zea mays | 1 | Zm00001eb105480_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-970 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6469 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.235, evm.TU.LG04.517 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g08760 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1011 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13480 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10871 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-9244, nbisL1-mrna-9245 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.276 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004176 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3668 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7694 |
| Salicaceae | Populus euphratica | 3 | populus_peu03372, populus_peu34221, populus_peu34222 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621471 |
| Solanaceae | Solanum chilense | 1 | SOLCI005700300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011005 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.5089_chr03_-, gene_16585 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2009 |
| Zosteraceae | Zostera marina | 1 | Zosma05g20100.v3.1 |