Basic Information
Locus ID:
Ag7G01097
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Transforming growth factor-beta receptor-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 94673340 | 94683366 | - | Ag7G01097 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 110,947.54 Da | 47.27 | 99.40 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10367 | Vacuolar sorting protein 39 domain 2 | 859 | 966 | 1.4E-29 | IPR019453 |
| Pfam | PF10366 | Vacuolar sorting protein 39 domain 1 | 541 | 619 | 2.2E-7 | IPR019452 |
| Pfam | PF00780 | CNH domain | 79 | 335 | 2.9E-6 | IPR001180 |
| Pfam | PF00637 | Region in Clathrin and VPS | 679 | 845 | 8.2E-11 | IPR000547 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 22 | 257 | 1.24E-5 | IPR036322 |
| ProSiteProfiles | PS50219 | Citron homology (CNH) domain profile. | 37 | 349 | 16.108072 | IPR001180 |
| ProSiteProfiles | PS50236 | Clathrin heavy-chain (CHCR) repeat profile. | 675 | 853 | 14.027934 | IPR000547 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G22860.1 | Vacuolar sorting protein 39. | 0 |
| RefSeq | XP_017229445.1 | PREDICTED: transforming growth factor-beta receptor-associated protein 1 homolog [Daucus carota subsp. sativus] | 0 |
| F4I312 | Vacuolar sorting protein 3 OS=Arabidopsis thaliana OX=3702 GN=VPS3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A166IGN0 | CNH domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003768 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 26.975271 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 17.936678 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 17.108049 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 20.537001 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 18.831625 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 15.766253 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 17.018225 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 13.686138 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 27.567371 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 30.349409 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 31.525621 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 31.80319 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 30.789989 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 27.696726 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.293597 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 12.090026 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.814756 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.969187 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 10.164523 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 14.577497 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.760926 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 16.422682 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 17.775621 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 15.889658 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.847154 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 17.700499 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.860246 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.34446 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 15.62052 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.015728 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.385951 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.403952 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.239346 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 10.231321 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 9.199085 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.417546 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.978454 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.223179 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.414154 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 11.113431 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.173136 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 18.982082 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 15.77002 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 19.637215 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 16.438683 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 18.656654 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.632645 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.67241 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.556009 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.085014 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37364 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11269 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015998 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g188900 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25725, Sbi_jg9557 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19082 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00026556 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl44282, Sgl49043 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000003562, gene:ENSEOMG00000011442 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0010520, CQ.Regalona.r1.8BG0011610 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30107890 |
| Apiaceae | Apium graveolens | 1 | Ag7G01097 |
| Arecaceae | Cocos nucifera | 1 | scaffold002973G000070 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715288 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1580.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G24837 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G22860.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006692m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g20340.v2.2 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1446 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1609 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g13290 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0289s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g32760 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4665 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.181 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012954 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G25293, Lb4G25294, Lb4G25309 |
| Poaceae | Echinochloa crus-galli | 5 | AH05.661, BH05.715, CH04.2149, CH05.822, CH07.578 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0408810, gene-QOZ80_5BG0457220 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0002660.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_019572 |
| Poaceae | Oryza coarctata | 2 | Oco09G000180, Oco10G000240 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g01360.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G005600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0201126 |
| Poaceae | Sporobolus alterniflorus | 9 | Chr01G014160, Chr01G014170, Chr01G014180, Chr01G029480 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G026300 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1AG001220 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G012500.4, TraesCS1B02G017200.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb267510_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-18425, nbis-gene-50650 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27519 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1513, evm.TU.LG22.405 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g21600, gene.Posoc03g24770 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.741, evm.TU.Scaffold_2_RagTag.1573 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-31694, nbisL1-mrna-3598, nbisL1-mrna-3659 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10315 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18961, nbisL1-mrna-5753 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.473 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006157, Maker00011309 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-2798, nbisL1-mrna-2799, nbisL1-mrna-8331 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21839, nbisL1-mrna-854 |
| Salicaceae | Populus euphratica | 4 | populus_peu03782, populus_peu03783, populus_peu03784 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641266 |
| Solanaceae | Solanum chilense | 1 | SOLCI002320800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020474 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.10424_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0542 |
| Zosteraceae | Zostera marina | 1 | Zosma06g08580.v3.1 |